Le jeudi 24 octobre 2013 à 17:13 -0700, Skye Bender-deMoll a écrit :
Dear r-devel-opers,
I'm working on a package that does some plot-intensive work using the
animation library. It turns out that this performs very badly in the
RStudio plot device, which is the preferred IDE for our team.
Skye,
I ran into a similar problem with RStudio. My solution was just to check
if windows exists and if it does, open windows, then check quartz and
so forth. You can restrict the exists function to look only in grDevices.
Dave
On Fri, Oct 25, 2013 at 4:19 AM, Milan Bouchet-Valat
Using SUSE Linux, Windows 32 bit and Windows 64 bit R 3.0.2 , I am unable
to use R CMD check successfully. Here is the Windows 64 bit report:
Z:\R\source\effectsR CMD check pkg
* using log directory 'Z:/R/source/effects/pkg.Rcheck'
* using R version 3.0.2 (2013-09-25)
* using platform:
This has been asked s many times that I think it may be a good
idea for R CMD check to just stop when the user passes a directory
instead of a tar ball to it, or automatically run R CMD build before
moving on. In my opinion, sometimes an FAQ and a bug are not entirely
different.
Regards,
You can see how R sets up the device option in grDevices:::.onLoad,
but unfortunately the code there is not easily usable.
I think you can treat the NOTE in R CMD check as a false warning and
explain the situation to CRAN maintainers in the email. Code analysis
using codetools in R CMD check is
On 25/10/2013 11:37 AM, Sanford Weisberg wrote:
Using SUSE Linux, Windows 32 bit and Windows 64 bit R 3.0.2 , I am unable
to use R CMD check successfully. Here is the Windows 64 bit report:
Both checking and installing code are really designed to work on
tarballs, as John said. Some parts
On Wed, Oct 23, 2013 at 8:33 PM, Kasper Daniel Hansen
kasperdanielhan...@gmail.com wrote:
This is about the new note
Depends: includes the non-default packages:
BiocGenerics Biobase lattice reshape GenomicRanges
Biostrings bumphunter
Adding so many packages to the search
This has nothing to do with changes in base R. It is due to changes in
the dependent packages. These changes mean that when you call lapply it
does not dispatch the right as.list method.
The method you want (as.list.ts) is provided by the zoo package. It
splits a multivariate time series into a
One additional point to Michael's summary:
The methods package itself should stay in Depends:, to be safe.
There are a number of function calls to the methods package that may be
included in generated methods for user classes. These have not been revised to
work when the methods package is
On 25 October 2013 at 13:39, John Chambers wrote:
| One additional point to Michael's summary:
|
| The methods package itself should stay in Depends:, to be safe.
|
| There are a number of function calls to the methods package that may be
included in generated methods for user classes. These
On Fri, Oct 25, 2013 at 1:39 PM, John Chambers j...@r-project.org wrote:
One additional point to Michael's summary:
The methods package itself should stay in Depends:, to be safe.
There are a number of function calls to the methods package that may be
included in generated methods for user
On 13-10-25 05:21 PM, Henrik Bengtsson wrote:
On Fri, Oct 25, 2013 at 1:39 PM, John Chambers j...@r-project.org
wrote:
One additional point to Michael's summary:
The methods package itself should stay in Depends:, to be safe.
It would be nice to have more detail about when this is
Software generated in methods for user classes calls functions in the methods
package, as I said. I don't know the circumstances (if any) when such calls
fail to find functions if the whole package is imported. Perhaps someone on
this list may have examples.
But for sure just importing
On 10/25/2013 11:26 AM, Michael Lawrence wrote:
On Wed, Oct 23, 2013 at 8:33 PM, Kasper Daniel Hansen
kasperdanielhan...@gmail.com wrote:
This is about the new note
Depends: includes the non-default packages:
‘BiocGenerics’ ‘Biobase’ ‘lattice’ ‘reshape’ ‘GenomicRanges’
‘Biostrings’
Dear BioC developers,
I am trying to subset an RleList with an IRangesList (see attached rdata
object). Unfortunately, the following line fails with IRanges 1.20.0:
return_rles[keep_ranges] - TRUE
Error in subsetListByList_replace(x, i, value) :
cannot subscript an unnamed list-like object by
Sorry, forgot that attachments don't make it through.
Here's how to generate the example objects and reproduce the error:
library(IRanges)
keep_ranges - IRangesList( IRanges( start=20, end=108), IRanges( start=41,
end=131), IRanges( start=21, end=105))
return_rles - RleList(
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