Hervé Pagès hpa...@fredhutch.org
on Tue, 12 May 2015 15:18:42 -0700 writes:
Hi,
The man page for new() suggests that if 'a' is an object with slots
slot1 and slot2 and C is a class that extends the class of 'a',
then the 2 following calls should be equivalent:
new(C, a, ...)
On 13-05-15 18:08, Gábor Csárdi wrote:
On Wed, May 13, 2015 at 12:05 PM, Jan van der Laan rh...@eoos.dds.nl
mailto:rh...@eoos.dds.nl wrote:
[...]
Too bad. Since it is only a handful of files, I will probably move
them directly into the src directory and prefix them. It would have
While at it: 'Makevars' is an R invention (i.e. documentation of it
is only available through the R docs), correct? /Henrik
On Wed, May 13, 2015 at 10:10 AM, Kevin Ushey kevinus...@gmail.com wrote:
One other solution that's only a little crazy: you could have a R
function within your package
Greetings,
I am collaborating with developing the bigmemory package and have run in to
a strange problem when we run R CMD CHECK. For some reason that isn't
clear to us one of the examples crashes stating:
Error: memory could not be allocated for instance of type big.matrix
You can see the
- Original Message -
From: Charles Determan cdeterma...@gmail.com
To: r-devel@r-project.org
Sent: Wednesday, May 13, 2015 11:31:36 AM
Subject: [Rd] example fails during R CMD CHECK but works interactively?
Greetings,
I am collaborating with developing the bigmemory package and
Thank you for the kind offer! Unfortunately, the problem is really Sparc
Solaris:
http://cran.r-project.org/web/checks/check_results_metafor.html
On Solaris x86 and all other flavors, it passes without errors.
Best,
Wolfgang
From: Gábor Csárdi [csardi.ga...@gmail.com]
Sent: Wednesday, May 13,
I have tracked this discrepancy down to the use of `SHLIB_LD` rather than
`SHLIB_LINK` in share/make/winshlib.mk
https://github.com/wch/r-source/blob/7348d71d1cb18e9c4b55950fd57198e8d2abcc8b/share/make/winshlib.mk.
This variable has been used in winshlib.mk since svn r47953
Thank you Dan but it isn't my tests that are failing (all of them pass
without problem) but one of the examples from the inst/examples directory.
I did try, however, to start R with the environmental variables as you
suggest but it had no effect on my tests.
Charles
On Wed, May 13, 2015 at 1:51
Hi Wolfgang, I can test your package, please send it to me in private.
Btw. I only have an x86 machine, and no sparc, so if your problem is
sparc-specific, then my test is probably useless.
Gabor
On Wed, May 13, 2015 at 3:48 PM, Viechtbauer Wolfgang (STAT)
Dear All,
The metafor package currently fails CRAN checks on Sparc Solaris:
http://cran.r-project.org/web/checks/check_results_metafor.html
The problem is probably due to an unintended (= stupid) use of identical() in a
couple tests. I have changed that to more appropriate tests using
Thanks Martin for looking into this. H.
On 05/13/2015 03:57 AM, Martin Maechler wrote:
Hervé Pagès hpa...@fredhutch.org
on Tue, 12 May 2015 15:18:42 -0700 writes:
Hi,
The man page for new() suggests that if 'a' is an object with slots
slot1 and slot2 and C is a class that extends
I have some cpp-files from another library (boost) in a subdirectory
in my src directory (src/boost_src). I include these using the
following two lines in my Makevars:
SOURCES = $(wildcard *.cpp boost_src/*.cpp)
OBJECTS = $(SOURCES:.cpp=.o)
However, R CMD check complains about my use of
On 13 May 2015 at 17:27, Jan van der Laan wrote:
|
| I have some cpp-files from another library (boost) in a subdirectory
| in my src directory (src/boost_src). I include these using the
| following two lines in my Makevars:
|
| SOURCES = $(wildcard *.cpp boost_src/*.cpp)
| OBJECTS =
On Wed, May 13, 2015 at 12:05 PM, Jan van der Laan rh...@eoos.dds.nl
wrote:
[...]
Too bad. Since it is only a handful of files, I will probably move them
directly into the src directory and prefix them. It would have been nice to
have been able to keep them separate.
If it is a couple of
Dirk Eddelbuettel e...@debian.org schreef:
On 13 May 2015 at 17:27, Jan van der Laan wrote:
|
| I have some cpp-files from another library (boost) in a subdirectory
| in my src directory (src/boost_src). I include these using the
| following two lines in my Makevars:
|
| SOURCES = $(wildcard
As kindly pointed out to me (oh my decaying gray matter), is.object()
is better suited for this test;
$ svn diff src/library/base/R/diag.R
Index: src/library/base/R/diag.R
===
--- src/library/base/R/diag.R (revision 68345)
+++
Is there a way to get the status code of a pipe() command? The
documentation suggests that it might be returned by close, however
this does not seem to be the case.
con - pipe(cat /etc/passwd, r)
stream - readLines(con, n = 10)
err - close(con)
print(err)
Hi Jeroen,
I think `pipe` might just be returning the status code of the
underlying command executed; for example, I get a status code of '0'
when I test a pipe on `ls`:
conn - pipe(ls)
stream - readLines(conn)
print(close(conn))
Similarly, I get an error code if I try to `ls` a
One other solution that's only a little crazy: you could have a R
function within your package that generates the appropriate (portable)
Makevars, and within the package `configure` script call that
function. For example
R --vanilla --slave -e source('R/makevars.R'); makevars()
And that
From: Martin Maechler maech...@lynne.stat.math.ethz.ch
diag() should not work only for pure matrices, but for all
matrix-like objects for which ``the usual methods'' work, such
as
as.vector(.), c(.)
That's why there has been the c(.) in there.
You can always make code faster if you
On 13 May 2015 at 10:10, Kevin Ushey wrote:
| One other solution that's only a little crazy: you could have a R
| function within your package that generates the appropriate (portable)
| Makevars, and within the package `configure` script call that
| function. For example
|
| R --vanilla
- Original Message -
From: Martin Morgan mtmor...@fredhutch.org
To: bioc-devel@r-project.org
Sent: Saturday, May 9, 2015 10:15:13 AM
Subject: [Bioc-devel] Use and Usability metrics / shields
Bioc developers!
It's important that our users be able to identify packages that are
Sweet; you went live with the badges/shields, e.g.
http://bioconductor.org/packages/release/bioc/html/affxparser.html
A positive side effect is that now there's a link from the package
page to to the package's check results, which I always wanted :)
Thanks for adding this
/Henrik
On Sun,
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