[Rd] bug report: inaccurate error message for stats::chisq.test

2018-08-22 Thread Ant F
Hi, `stats::chisq.test` checks that x and y each have at least 2 levels AFTER filtering on complete cases. It makes sense but the error message is misleading : “'x' and 'y' must have at least 2 levels” Here’s how to reproduce the issue : x <- structure(c(1L, 1L, 1L, 2L, 1L, 2L), .Label =

Re: [Rd] bug report: inaccurate error message for stats::chisq.test

2018-08-22 Thread Rui Barradas
Hello, A workaround could be y <- addNA(y) chisq.test(x,y) But this implies that the user was aware of the reason why the error. Hope this helps, Rui Barradas On 21/08/2018 15:31, Ant F wrote: Hi, `stats::chisq.test` checks that x and y each have at least 2 levels AFTER filtering on

[Bioc-devel] Git file size limits

2018-08-22 Thread Mike Smith
Hi, I'm trying to commit an update to Rhdf5lib but run into the 5MB file size restriction. The file in question is the pre-compiled Windows binary so I'm not sure there's anything I can do to make it smaller. Is is possible to make exceptions on a per-package basis? Thanks, Mike

Re: [Bioc-devel] Multiple Bioconductor Maintainers?

2018-08-22 Thread Warden, Charles
Hi Valarie, Thank you for your response. I didn’t know about the git.bioconductor.org commit option, so I will keep this in mind. I am currently pushing updates from my github account, so that may also be a good idea (but the group situation is a little complicated). This was certainly very

Re: [Bioc-devel] Multiple Bioconductor Maintainers?

2018-08-22 Thread Obenchain, Valerie
Hi Charles, We want just one person in the 'Maintainer' field in DESCRIPTION so there is a single point of contact. You can give multiple people commit access to the package on the git.bioconductor.org server. To do this, write this list (bioc-devel) and provide the emails and github

Re: [Bioc-devel] Git file size limits

2018-08-22 Thread Martin Morgan
exceptions can be made; this will take just a little bit of time, as our expert (Nitesh) is out of communication for a bit... On 08/22/2018 10:01 AM, Mike Smith wrote: Hi, I'm trying to commit an update to Rhdf5lib but run into the 5MB file size restriction. The file in question is the

Re: [Bioc-devel] Git file size limits

2018-08-22 Thread Mike Smith
Thanks Martin. I'll wait til Nitesh is back. Hopefully I've successfully reverted my changes to rhdf5 that depended on this! Cheers, Mike On Wed, 22 Aug 2018 at 19:20, Martin Morgan wrote: > exceptions can be made; this will take just a little bit of time, as our > expert (Nitesh) is out of