[Rd] allocMatrix error

2009-02-17 Thread Hamid Ashafi
On Sat, Feb 14, 2009 at 00:17, ashr...@ucdavis.edu wrote: Hi, I was trying to read ~400 chips in an affybatch and I got the same message. Could you find a remedy for that. My server has 128 GB of RAM. However, R halted ever before it uses the memory. I have been able to load upto 250 CEL files

Re: [Rd] allocMatrix error

2009-02-17 Thread Prof Brian Ripley
On Tue, 17 Feb 2009, Hamid Ashafi wrote: On Sat, Feb 14, 2009 at 00:17, ashr...@ucdavis.edu wrote: Hi, I was trying to read ~400 chips in an affybatch and I got the same message. Could you find a remedy for that. My server has 128 GB of RAM. However, R halted ever before it uses the memory.

[Rd] getGraphicsEvent in an example

2009-02-17 Thread Christophe Genolini
Hi the list, Is there a way to include a function using a getGraphicsEvent in the \examples section? Christophe __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] demo enhancement

2009-02-17 Thread Duncan Murdoch
On 16/02/2009 6:42 AM, Kjell Konis wrote: I put the diff here http://smat.epfl.ch/~konis/grabbag/demo.diff Kjell I've added this in R-devel, and also added ask at the same time. Duncan Murdoch On 16 févr. 09, at 12:35, Duncan Murdoch wrote: Kjell Konis wrote: Hello, I have a

Re: [Rd] allocMatrix error

2009-02-17 Thread Martin Morgan
Prof Brian Ripley rip...@stats.ox.ac.uk writes: On Tue, 17 Feb 2009, Hamid Ashafi wrote: On Sat, Feb 14, 2009 at 00:17, ashr...@ucdavis.edu wrote: Hi, I was trying to read ~400 chips in an affybatch and I got the same message. Could you find a remedy for that. My server has 128 GB of

Re: [Rd] Update today broke foreign package (PR#13533)

2009-02-17 Thread Peter Dalgaard
Prof Brian Ripley wrote: foregin_0.8-32 was testsd aginst 2.8.1 prior to release, and I've just tested it again. This might be a locale issue (but I also tested in a latin1 and C locale), but I think it is specific to some files. I have this with a codepage 1252 file as well. From my reply

Re: [Rd] getGraphicsEvent in an example

2009-02-17 Thread Greg Snow
Just wrap the example in either \dontrun{} or if(interactive()){ } That way that example will be skipped when the automatic tests are done, but will still be available for a reader to run by copy/paste or the examples function (2nd case above). This has worked for me, examples using these are

Re: [Rd] getGraphicsEvent in an example

2009-02-17 Thread Gabor Grothendieck
Also any demos in the demo directory will be skipped by the automated checks. On Tue, Feb 17, 2009 at 12:01 PM, Greg Snow greg.s...@imail.org wrote: Just wrap the example in either \dontrun{} or if(interactive()){ } That way that example will be skipped when the automatic tests are done,

[Rd] C basic indentation

2009-02-17 Thread Göran Broström
I use the recommendations in R coding standards, i.e., I put ;;; C (add-hook 'c-mode-hook (lambda () (c-set-style bsd))) ;;; ESS (add-hook 'ess-mode-hook (lambda () (ess-set-style 'C++ 'quiet) (add-hook

[Rd] plot.lm: Cook's distance label can overplot point labels

2009-02-17 Thread John Maindonald
The following code demonstrates an annoyance with plot.lm(): library(DAAGxtras) x11(width=3.75, height=4) nihills.lm - lm(log(time) ~ log(dist) + log(climb), data = nihills) plot(nihills.lm, which=5) OR try the following xy - data.frame(x=c(3,1:5), y=c(-2, 1:5)) plot(lm(y ~ x, data=xy),

Re: [Rd] plot.lm: Cook's distance label can overplot point labels

2009-02-17 Thread John Fox
Dear John, It occurs to me that the title above the graph, Residuals vs. Leverage, is entirely redundant since the x-axis is labelled Leverage and the y-axis Studentized residuals. Why not use the title above the graph for Cook's distance countours? Regards, John -Original Message-

Re: [Rd] C basic indentation

2009-02-17 Thread Prof Brian Ripley
This seems a question for the ESS-help list. But you should be using Emacs customization these days: I have in my .emacs '(c-basic-offset 4) '(c-default-style bsd) in custom-set-variables, and that is what the 'R Internals' manual says for Emacs = 21. (You can set that from the

Re: [Rd] C basic indentation

2009-02-17 Thread Göran Broström
Prof Brian Ripley wrote: This seems a question for the ESS-help list. But you should be using Emacs customization these days: I have in my .emacs '(c-basic-offset 4) '(c-default-style bsd) in custom-set-variables, and that is what the 'R Internals' manual says for Emacs = 21. (You can