Re: [Rd] S4 data dump or?

2009-03-02 Thread Prof Brian Ripley
On Mon, 2 Mar 2009, Paul Gilbert wrote: I am trying to dump some data in a file that I will add to a package. The data has an attribute which is a S4 object, and this seems to cause problems. What is the preferred way to write a file with a dataset that has some S4 parts, so that it can be in

[Rd] S4 data dump or?

2009-03-02 Thread Paul Gilbert
I am trying to dump some data in a file that I will add to a package. The data has an attribute which is a S4 object, and this seems to cause problems. What is the preferred way to write a file with a dataset that has some S4 parts, so that it can be included in a package? Paul Gilbert

Re: [Rd] R does not start on my MacBook Pro3,1 (PR#13565)

2009-03-02 Thread Mathieu Ribatet
I'm not sure this will work under MacOS but you should try to run R from a shell and see any informative message displayed in it. Cheers, Mathieu * it might be useful to give us some details about the code you ran and caused the issue. Le lundi 02 mars 2009 à 17:15 +0100, marycme...@mac.com a éc

[Rd] R does not start on my MacBook Pro3,1 (PR#13565)

2009-03-02 Thread marycmeyer
Help! I was running R code and started getting error messages that would not stop repeating. I force-quit R, but when I attempted to run it again, it would not start (Icon kept bouncing until I force-quit again). I restarted the computer, then I reinstalled R, but that did not fix the p

[Rd] Distance between clusters

2009-03-02 Thread Corrado
Dear friends I reformulate the question. I think I did not formulate it properly. I have some data on some sites. I can define a dissimilarity between each pair of sites. Using this dissimilarity, I have clustered the sites using the hclust algorithm, with method ward. I then obtain 48 clusters

Re: [Rd] Unexpected side effect of the ":::" operator on the value of isGeneric

2009-03-02 Thread Martin Maechler
> "Wolfi" == Wolfgang Huber > on Sat, 28 Feb 2009 18:01:19 + writes: Wolfi> Dear Martin name masking is a separate issue, which I Wolfi> do not want to explore here. Wolfi> If one accepts the notion that unrelated generics of Wolfi> the same name may exist in diff

Re: [Rd] Colour mistake (PR#13562)

2009-03-02 Thread Prof Brian Ripley
This is the way Rgui (which I guess you mean as Rterm does not use colours) was intended to work, so it is not a 'mistake'. Rather than 'red' and 'blue', Rgui has user-selectable separate colours for user input (default DarkRed) and for R output (default NavyBlue). When you do what I believe y