Re: [Bioc-devel] IntervalTree and Genomic Ranges

2013-05-29 Thread Hector Corrada Bravo
That's great! There's some cleaning up to do there how should we do this post-merge? On Wed, May 29, 2013 at 4:19 PM, Valerie Obenchain voben...@fhcrc.org wrote: Hi Hector, Michael, This sounds great. Bringing these into svn is fine with us. Michael, do you want to merge these in? Val On

[Rd] Customizing tab completion for package functions?

2013-05-29 Thread Stefan Holzheu
Dear all, I've been searching around for some hours now, but did not find a solution. Is there a way to customize the tab completion behavior of R? In more detail. We have a R packages called bayeos. This package allows users to access a time series database via XML-RPC directly from R. The

[Rd] Unable to optimize error returned in factanal using R-3.0.1, Windows 64 bit, and OpenBLAS

2013-05-29 Thread Adler, Avraham
Hello, I have been trying for weeks to compile a 64-bit Rblas. I started with ATLAS where I have had success in the past, but 64 bit was not behaving, and as each compilation takes between 9 and 12 hours, test, check, and revise was not going to be really viable. I therefore switched to

[Rd] quick question about glm() example

2013-05-29 Thread Ben Bolker
I don't have a copy of Dobson (1990) from which the glm.D93 example is taken in example(glm), but I'm strongly suspecting that these are made-up data rather than real data; the means of the responses within each treatment are _identical_ (equal to 16 2/3), so two of the parameters are estimated

Re: [Rd] quick question about glm() example

2013-05-29 Thread peter dalgaard
On May 29, 2013, at 19:58 , Ben Bolker wrote: I don't have a copy of Dobson (1990) from which the glm.D93 example is taken in example(glm), but I'm strongly suspecting that these are made-up data rather than real data; the means of the responses within each treatment are _identical_

Re: [Rd] quick question about glm() example

2013-05-29 Thread Ben Bolker
On 13-05-29 03:05 PM, peter dalgaard wrote: On May 29, 2013, at 19:58 , Ben Bolker wrote: I don't have a copy of Dobson (1990) from which the glm.D93 example is taken in example(glm), but I'm strongly suspecting that these are made-up data rather than real data; the means of the

[Rd] What is preferable - a single large package or a few smaller packages?

2013-05-29 Thread Peter Langfelder
Hi all, I maintain the WGCNA package which at present has nearly 200 functions. In the future there will be more. Curious whether it would be preferable or useful to split the package into a couple different ones with different aims. Obviously, when one calls a function in R, package name spaces

Re: [Rd] What is preferable - a single large package or a few smaller packages?

2013-05-29 Thread Hervé Pagès
Hi Peter, On 05/29/2013 03:38 PM, Peter Langfelder wrote: Hi all, I maintain the WGCNA package which at present has nearly 200 functions. In the future there will be more. Curious whether it would be preferable or useful to split the package into a couple different ones with different aims.

Re: [Rd] R-3.0.1 - transient make check failure in splines-EX.r

2013-05-29 Thread Paul Gilbert
Avraham I resolved this only by switching to a different BLAS on the 32 bit machine.Since no one else seemed to be having problems, I considered it possible that there was a hardware issue on my old 32 bit machine. The R check test failed somewhat randomly, but often. most disconcertingly, it