[Bioc-devel] how could I get new packages list

2013-10-11 Thread Ou, Jianhong
Hi, When I check http://master.bioconductor.org/developers/new_packages/ recently, I can not get new packages list. Is there any other methods to get the new available packages? Thanks. Yours sincerely, Jianhong Ou LRB 670A Program in Gene Function and Expression 364 Plantation Street

Re: [Bioc-devel] how could I get new packages list

2013-10-11 Thread Dan Tenenbaum
- Original Message - From: Jianhong Ou jianhong...@umassmed.edu To: bioc-devel@r-project.org Sent: Friday, October 11, 2013 6:13:16 AM Subject: [Bioc-devel] how could I get new packages list Hi, When I check http://master.bioconductor.org/developers/new_packages/ recently, I

Re: [Bioc-devel] how could I get new packages list

2013-10-11 Thread Dan Tenenbaum
Actually much simpler is to look on twitter: https://twitter.com/@bioconductor It appears the automated new package feed is still working there. Dan - Original Message - From: Dan Tenenbaum dtene...@fhcrc.org To: Jianhong Ou jianhong...@umassmed.edu Cc: bioc-devel@r-project.org

Re: [Bioc-devel] how could I get new packages list

2013-10-11 Thread Ou, Jianhong
Hi Dan, Thanks a lot. Yours sincerely, Jianhong Ou LRB 670A Program in Gene Function and Expression 364 Plantation Street Worcester, MA 01605 On 10/11/13 10:53 AM, Dan Tenenbaum dtene...@fhcrc.org wrote: - Original Message - From: Jianhong Ou jianhong...@umassmed.edu To:

[Bioc-devel] DNaseR - a new Bioconductor package for DNase-seq digital genomic footprinting

2013-10-11 Thread Pedro Madrigal
Dear BioC developers, DNase-seq has been used to measure chromatin accessibility in a given tissue or cell type on a genome-wide scale In addition to these DNaseI hypersensitivite sites (DHSs), short regions of protected nucleotides known as footprints can be detected, indicating

Re: [Rd] install.packages() removes package on Windows

2013-10-11 Thread Jon Olav Skoien
On 11-Oct-13 3:15, Henrik Bengtsson wrote: My guess is that the DLL of the already installed XML package is loaded by another R session and that prevents the corresponding DLL file: path - system.file(libs, package=XML) list.files(path, recursive=TRUE, pattern=dll$) [1] i386/XML.dll

Re: [Rd] install.packages() removes package on Windows

2013-10-11 Thread Dan Tenenbaum
Thanks Henrik and Jon, that's very helpful. Dan - Original Message - From: Jon Olav Skoien jon.sko...@jrc.ec.europa.eu To: Henrik Bengtsson h...@biostat.ucsf.edu Cc: Dan Tenenbaum dtene...@fhcrc.org, R-devel r-devel@r-project.org Sent: Friday, October 11, 2013 1:38:26 AM Subject:

Re: [Rd] C++ debugging help needed

2013-10-11 Thread Dominick Samperi
I'm not sure if this is related, but there is one issue that needs to be addressed a link time for object files that are generated from C++ code. In C++ it is permissible to include definitions (not just declarations) in header files. This means more that one object file may contain a definition