Dear BioC developers,
If you are producing of analyzing ChIP-exo data (Rhee HS, Pugh BF,
2011, Cell 147:1408-19) with replicates, you might want to consider
CexoR to uncover high-resolution protein-DNA interactions. It
processes data data in BAM aligment format. Devel version is
at:Â
Hello,
The code
plot(regHeatmap(expressionMatrix))
shows a heatmap.
When I add an extra parameter
plot(regHeatmap(expressionMatrix), list(status = hidden))
I get the error
Error in plot.new() : outer margins too large (figure region too small)
In addition: Warning message:
In
On Sat, Oct 12, 2013 at 3:58 PM, Duncan Murdoch
murdoch.dun...@gmail.com wrote:
On 13-10-12 6:49 PM, R. Michael Weylandt michael.weyla...@gmail.com wrote:
On Oct 9, 2013, at 21:18, Duncan Murdoch murdoch.dun...@gmail.com wrote:
On 13-10-09 7:54 PM, Henrik Bengtsson wrote:
On my related
In R 3.1.0 (~April 2014), support for vignettes in inst/doc/ will go
away (and probably much sooner for CRAN submission), e.g.
checking for old-style vignette sources ... NOTE
Vignette sources only in ‘inst/doc’:
‘R.devices-overview.tex.rsp’
A ‘vignettes’ directory is required as from R 3.1.0
and
From the help/docs it is pretty clear that one could/should only
assume that the 'base' namespace is available when a finalizer
function is evaluated. What is not clear to me is whether you can
safely attach/load packages in your finalizer function. For example,
are the following finalizer
Henrik,
On 14/10/2013, at 00:35 AM, Henrik Bengtsson wrote:
In R 3.1.0 (~April 2014), support for vignettes in inst/doc/ will go
away (and probably much sooner for CRAN submission), e.g.
I've been sticking with inst/doc/ for backward compatible reasons so
that I can use a fallback
On Sun, Oct 13, 2013 at 9:51 PM, Jari Oksanen jari.oksa...@oulu.fi wrote:
Henrik,
On 14/10/2013, at 00:35 AM, Henrik Bengtsson wrote:
In R 3.1.0 (~April 2014), support for vignettes in inst/doc/ will go
away (and probably much sooner for CRAN submission), e.g.
I've been sticking with
