Hi Renan,
this was more a conceptional choice. If you think about how IRanges and
GRanges are defined, a sequence letter should be placed in the middle in
between the start and the end position of a given base. Now the slightly
confusing thing is that a range from 1 to 2 actually has width 2, and
Hej!
I was wondering if the version 4.0.0 of roxygen2 is supported on the devel
build system.
Cheers,
Nico
---
Nicolas Delhomme
The Street Lab
Department of Plant Physiology
Umeå Plant Science Center
Tel: +46 90 786 5478
Email:
- Original Message -
From: Tom Harrop twharr...@gmail.com
Cc: bioc-devel bioc-devel@r-project.org, Bioconductor mailing list
bioconduc...@r-project.org
Sent: Tuesday, May 6, 2014 1:25:57 AM
Subject: Re: [BioC] Mavericks (Mac OS X 10.9) binary Bioconductor packages
available for
Thanks Dan!
That’s exactly what I’m doing - building it my own - but I’ve just migrated
from using roxygen2 3.2.1 to roxygen2 4.0.0 in devel so I just wanted to make
sure things would turn out fine :-)
Cheers,
Nico
---
Nicolas
Hi everyone,
As many of you already know we have long provided organism annnotation
packages that give gene based annotations for selected organisms. And
we intend to keep doing that. But these days there is also a lot of
other data at NCBI that could be used to make gene based databases
Date: Tue, 6 May 2014 09:44:16 -0700
From: mtmor...@fhcrc.org
To: gifi2...@hotmail.com
Subject: Re: [Bioc-devel] libRblas and libRlapack are broken dependencies for
packages in R 3.1.0 on Fedora 20
On 05/06/2014 09:28 AM, E N wrote:
From: mtmor...@fhcrc.org
To: gifi2...@hotmail.com;
On 05/06/2014 12:29 PM, E N wrote:
Date: Tue, 6 May 2014 09:44:16 -0700
From: mtmor...@fhcrc.org
To: gifi2...@hotmail.com
Subject: Re: [Bioc-devel] libRblas and libRlapack are broken dependencies for
packages in R 3.1.0 on Fedora 20
On 05/06/2014 09:28 AM, E N wrote:
From: mtmor...@fhcrc.org
[...] Presumably you can
work around this by installing the lapack / blas dependency manually (i.e.,
through the fedora package manager), and getting Tom Callaway to update the
dependencies in R-3.1.0-4.fc20.src.rpm (although I see there that
bals-devel=
3.0 is already require'd.
Partly I
Your answers are amazing! Now I have a bunch of packages to re-install:
xx - installed.packages()
table(xx[, Built])
yy - xx[xx[, Built] != 3.1.0, Package]
length(yy)
[1] 103
That's make it for my night! I'll do the upgrade tomorrow, hoping I won't be
back on the mail list despite your kind
You can also use is.element(els,set) instead of the equivalent
els%in%set and leave your precedence problems behind.
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Mon, May 5, 2014 at 10:35 PM, peter dalgaard pda...@gmail.com wrote:
On 06 May 2014, at 01:05 , Hervé Pagès hpa...@fhcrc.org
BTW, that %in% has precedence over arithmetic operations is surprising,
error-prone, and doesn't cover any reasonable use case (who needs to
multiply the logical vector returned by %in% by some value?) but that's
another story:
The point here is that the %foo% operators all have the _same_
On 06 May 2014, at 18:20 , Hadley Wickham h.wick...@gmail.com wrote:
BTW, that %in% has precedence over arithmetic operations is surprising,
error-prone, and doesn't cover any reasonable use case (who needs to
multiply the logical vector returned by %in% by some value?) but that's
another
On 06/05/2014 1:01 PM, peter dalgaard wrote:
On 06 May 2014, at 18:20 , Hadley Wickham h.wick...@gmail.com wrote:
BTW, that %in% has precedence over arithmetic operations is surprising,
error-prone, and doesn't cover any reasonable use case (who needs to
multiply the logical vector returned
Dear list,
When installing the latest version of Rtools (3.1.0.1942) into a path that
contains more than 96 characters on Windows 7 64-bit,
e.g. into
C:\TheLatestRtoolsInAPathWithMoreThanNinetySixCharactersWillCrashTheRSessionUponCallingTheSysWhichFunctionInRToGetTheGccPath
and assuming that
Here is source code for help(Syntax) from S+, which I think follows
closely the original S help file:
.Ix precedence
The following \f6infix\fP operators are recognized by the parser.
They are listed in decreasing precedence.
In the event of ties, evaluation is from left to right.
.sp
.in +.5i
.nf
On 05/06/2014 08:54 AM, William Dunlap wrote:
You can also use is.element(els,set) instead of the equivalent
els%in%set
No they are not *equivalent*. Equivalent means you could substitute
one by the other in your code without changing its behavior.
H.
and leave your precedence problems
When does els%in%set give a different result than is.element(els,set)?
I assumed they were copied form S+, where they are the same except
for argument names, but I may be wrong.
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Tue, May 6, 2014 at 12:23 PM, Hervé Pagès hpa...@fhcrc.org wrote:
On
On 05/06/2014 12:36 PM, William Dunlap wrote:
When does els%in%set give a different result than is.element(els,set)?
I assumed they were copied form S+, where they are the same except
for argument names, but I may be wrong.
els - 2:1
set - 1:6
- els%in%set
[1] FALSE FALSE
-
In your example els%in%set gave the same result as
is.element(els,set), but because of precedence issues putting a unary
minus in front caused them to be given different inputs - one got -els
and the other got just els for the first argument. To change one to
the other you have to edit the parsed
On 05/06/2014 01:15 PM, William Dunlap wrote:
In your example els%in%set gave the same result as
is.element(els,set), but because of precedence issues putting a unary
minus in front caused them to be given different inputs - one got -els
and the other got just els for the first argument.
So
On May 6, 2014, at 1:06 PM, Hervé Pagès wrote:
On 05/06/2014 12:36 PM, William Dunlap wrote:
When does els%in%set give a different result than is.element(els,set)?
I assumed they were copied form S+, where they are the same except
for argument names, but I may be wrong.
els - 2:1
Run the following function over the output of
parse(yourSourceCode.R) to edit the parse tree:
inToIsElement - function (expr)
{
# expr should be an expression or a call, not a function.
# The output of parse(keep.source=FALSE) or quote() is good.
if (is.call(expr)
On 05/06/2014 01:44 PM, William Dunlap wrote:
Run the following function over the output of
parse(yourSourceCode.R) to edit the parse tree:
inToIsElement - function (expr)
{
# expr should be an expression or a call, not a function.
# The output of parse(keep.source=FALSE) or quote()
23 matches
Mail list logo
