[Bioc-devel] hedgehog Subversion server upgrade Tuesday 9/30

2014-09-17 Thread Dan Tenenbaum
Hello Bioconductor developers, On Tuesday 9/30 at 8:00 AM (Seattle time), the Subversion server on hedgehog will stop for two hours until 10:00 AM. hedgehog is the svn server for all Bioconductor packages, so this will mean you will be unable to commit or check out repositories during this

[Bioc-devel] The release is fast approaching. Information about upcoming deadlines.

2014-09-17 Thread Marc Carlson
Hello package contributors, Please note that next Thursday is the deadline for submitting new packages if you want them to make it into the upcoming October release. You can see the release schedule here: http://www.bioconductor.org/developers/release-schedule/ Please also take note of the

Re: [Bioc-devel] hedgehog Subversion server upgrade Tuesday 9/30

2014-09-17 Thread Kasper Daniel Hansen
The standard install of subversion on a recent Mac is 1.7.10. Is the 1.8.8 backwards compatible with earlier clients? I have only used newer clients with older repositories, newer the other way around. Kasper On Wed, Sep 17, 2014 at 4:35 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: Hello

[Rd] trivial typo in R-exts.texi

2014-09-17 Thread Ben Bolker
From latest SVN release (66624). (I think I may have reported this before?) 430-@c DESCRIPTION field Maintainer 431-The mandatory @samp{Maintainer} field should give a @emph{single} name 432:followed a @emph{valid} (RFC 2822) email address in angle brackets. It 433-should not end in a period

[Rd] issue with compiling r6

2014-09-17 Thread Ben Bolker
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 I am painfully aware that this is most likely a problem with my system, but I am nevertheless going to ask if anyone has any ideas/suggestions for diagnosis and trouble-shooting. - From a clean checkout of release 66624 on Ubuntu 12.04 (32-bit,

Re: [Rd] issue with compiling r6

2014-09-17 Thread peter dalgaard
On 17 Sep 2014, at 17:04 , Ben Bolker bbol...@gmail.com wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 I am painfully aware that this is most likely a problem with my system, but I am nevertheless going to ask if anyone has any ideas/suggestions for diagnosis and trouble-shooting.

Re: [Rd] issue with compiling r6

2014-09-17 Thread Ben Bolker
Thanks for the information. It's the old story -- it's only once you finally convince yourself that the problems are always on your end and never bugs in the other guy's (development) code that you actually encounter bugs in the other guy's code. Ben Bolker On 14-09-17 11:32 AM, peter

[Rd] cleanup temporary directory

2014-09-17 Thread Sandip Nandi
Hi , When a R session runs , it creates a temporary directory . I am using R_CleanTempDir() to clean it up . It looks like its not working properly . So what exactly is going on here is , my example is main() start__R__Interpreter while(1) { execute R scripts using R_parseVector

[Rd] Regression and inconsistency of width of apostrophes in R vignettes

2014-09-17 Thread Hin-Tak Leung
My main dev machine died a well-deserved death a few weeks ago after six and a half years of faithful service, and refused to be re-animated. A substantial part of setting up its replacement is re-running a lot of R vignettes (mostly for timing to establish new performance baselines) - and also

[Rd] Can't Find Function After requireNamespace

2014-09-17 Thread Dario Strbenac
I have a simple function : f - function() { if(requireNamespace(ggplot2)) qplot(Sepal.Length, Petal.Length, data = iris, color = Species) else message(No graphics, just text.) } ggplot2 is in the Suggests field of the DESCRIPTION file. When I load the package, and run the function,

Re: [Rd] Can't Find Function After requireNamespace

2014-09-17 Thread Simon Urbanek
On Sep 17, 2014, at 10:00 PM, Dario Strbenac dstr7...@uni.sydney.edu.au wrote: I have a simple function : f - function() { if(requireNamespace(ggplot2)) qplot(Sepal.Length, Petal.Length, data = iris, color = Species) else message(No graphics, just text.) } ggplot2 is in the

Re: [Rd] Can't Find Function After requireNamespace

2014-09-17 Thread Simon Urbanek
BTW: you probably also want to use requireNamespace(..., quietly=TRUE) otherwise if sort of defeats the purpose ... On Sep 17, 2014, at 10:46 PM, Simon Urbanek simon.urba...@r-project.org wrote: On Sep 17, 2014, at 10:00 PM, Dario Strbenac dstr7...@uni.sydney.edu.au wrote: I have a