Dear Bioc developers,
There seems to be an issue with GenomicAlignments or dependent
packages as I can no longer read BAM files with readGAlignmentPairs
that could be read without problems previously (see example below). I
assume this is a general problem but can provide test files if
necessary.
Hi Leonard,
You can also see this error on the build report:
http://bioconductor.org/checkResults/3.1/bioc-LATEST/GenomicAlignments/zin2-buildsrc.html
This is a known issue that is the consequence of a recent change in
Rsamtools. We'll sort it out.
Thanks for your patience,
H.
On
Hi Hervé,
Thanks for the quick reply - I didn't notice the build reports.
Best wishes
Leonard
On Fri, Dec 12, 2014 at 12:55 PM, Hervé Pagès hpa...@fredhutch.org wrote:
Hi Leonard,
You can also see this error on the build report:
Duncan Murdoch murdoch.dun...@gmail.com writes:
users of other languages may want to have messages and variable names
in their native language, and ASCII might not be enough for that.
Allowing for messages in non-ASCII encodings would probably be a good
idea, but I think allowing non-ASCII
On 12/12/2014, 4:12 AM, Bjørn-Helge Mevik wrote:
Duncan Murdoch murdoch.dun...@gmail.com writes:
users of other languages may want to have messages and variable names
in their native language, and ASCII might not be enough for that.
Allowing for messages in non-ASCII encodings would
On Fri, Dec 12, 2014 at 06:01:22AM -0500, Duncan Murdoch wrote:
On 12/12/2014, 4:12 AM, Bj??rn-Helge Mevik wrote:
Duncan Murdoch murdoch.dun...@gmail.com writes:
users of other languages may want to have messages and variable names
in their native language, and ASCII might not be enough
On 12/12/2014, 7:34 AM, Jan Kim wrote:
On Fri, Dec 12, 2014 at 06:01:22AM -0500, Duncan Murdoch wrote:
On 12/12/2014, 4:12 AM, Bj??rn-Helge Mevik wrote:
Duncan Murdoch murdoch.dun...@gmail.com writes:
users of other languages may want to have messages and variable names
in their native
I'm would perhaps not go as far as calling them dangerous, but non-ASCII
characters in code are a mixed blessing which personally I'd opt to not
have, on balance. Being German I can understand that people may want
umlauted characters in their variable names, but where this catches on,
it's
Duncan Murdoch murdoch.dun...@gmail.com writes:
On 12/12/2014, 4:12 AM, Bjørn-Helge Mevik wrote:
Duncan Murdoch murdoch.dun...@gmail.com writes:
users of other languages may want to have messages and variable names
in their native language, and ASCII might not be enough for that.
On Fri, Dec 12, 2014 at 12:34 PM, Jan Kim jtt...@googlemail.com wrote:
it's just a matter of time that people get characters into their code that
are different but indistinguishable in the font they use (I've seen this
with \H{o} rather than a \{o}), and mega-personmonths are wasted puzzling
On Fri, Dec 12, 2014 at 04:58:52PM +, Barry Rowlingson wrote:
On Fri, Dec 12, 2014 at 12:34 PM, Jan Kim jtt...@googlemail.com wrote:
it's just a matter of time that people get characters into their code that
are different but indistinguishable in the font they use (I've seen this
with
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