[Bioc-devel] remove history vignettes

2015-11-17 Thread 顾祖光
Hi, I am developing a package called ComplexHeatmap and re-format the vignettes recently. I deleted the old vignettes and created several new vignettes. But when I look at the web page of the package ( http://bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html), the old vignette files

Re: [Bioc-devel] remove history vignettes

2015-11-17 Thread Gabe Becker
Well, You shouldn't expect the release branches to change at all based on anything you do on trunk. They never will. The release branch is (almost completely frozen), you shouldn't be making changes there generally. Changes in documentation are a grey area, I suppose, but I try to avoid those as

Re: [Bioc-devel] remove history vignettes

2015-11-17 Thread 顾祖光
Thanks for your reply! I have already updated the package (also with bumping version numbers) for many times but these old vignettes are still there. They even exist in the release branch: http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html On Tue, Nov 17, 2015 at 3:44 PM,

[Bioc-devel] Coverage test badge not updating

2015-11-17 Thread Leonardo Collado Torres
Hi, In my packages I enabled testing (via testthat) a few weeks ago. I did so as can be seen in https://github.com/leekgroup/derfinderHelper/commit/26d9d5543d9082f85bbb2d0ae9f02c5c309b9a48 for the changes to tests/test-all.R You can see that the tests are actually being run at

[Rd] Exporting a method to a cluster object

2015-11-17 Thread Philip Leifeld
Hi, This is my first message to this list. It would be great if people here could help me with the following problem (self-contained code example below): I have a list of matrices and would like to apply a summary function to the matrices in the list. The matrices represent social networks,

Re: [Rd] Small request of a feature improvement in the next version of R

2015-11-17 Thread Martyn Plummer
On Mon, 2015-11-16 at 20:11 -0500, Paul Grosu wrote: > Hi Everyone, > > Sorry to bother the list with this small request, but I've run into this > issue and was wondering if it could be fixed in the next version of R. > Sorry if it was raised in a previous thread: > > So when I try the following