Re: [Rd] BUG?: On Linux setTimeLimit() fails to propagate timeout error when it occurs (works on Windows)

On 10/25/2016 9:44 PM, Henrik Bengtsson wrote: setTimeLimit(elapsed=1) causes a timeout error whenever a call takes more than one second. For instance, this is how it works on Windows (R 3.3.1): setTimeLimit(elapsed=1) Sys.sleep(10); message("done") Error in Sys.sleep(10) : reached elapsed

[Rd] BUG?: On Linux setTimeLimit() fails to propagate timeout error when it occurs (works on Windows)

setTimeLimit(elapsed=1) causes a timeout error whenever a call takes more than one second. For instance, this is how it works on Windows (R 3.3.1): > setTimeLimit(elapsed=1) > Sys.sleep(10); message("done") Error in Sys.sleep(10) : reached elapsed time limit Also, the error propagates

[Bioc-devel] Fwd: Question about a package submission

Ioannis Vardaxis Stipendiat NTNU Sendt fra min iPhone Videresendt melding: Fra: "bioconductorseat...@gmail.com" > Dato: 26. oktober 2016 kl. 00.55.14 CEST Til: Ioannis Vardaxis

Re: [Rd] Support for signing R packages with GPG

Thanks Jeroen. The R Foundation has recently formed a working group to look into package authentication. There are basically two models. One is the GPG based model you describe; the other is to use X.509 as implemented in the PKI package. It's not yet clear which way to go but we are thinking

[Bioc-devel] incomplete vignette on macosx

Hello, I noticed the vignette of the macosx build of my package[1] is incomplete, the generated images were not included in the html. The windows, linux and the online vignette was generated properly. I built the package locally on my macosx without any errors and the vignette is generated

Re: [Bioc-devel] No release svn repository for proFIA/plasFIA maintainer

The same credentials work for release. - Original Message - > From: "DELABRIÈRE Alexis" > To: "bioc-devel" > Sent: Tuesday, October 25, 2016 4:43:17 AM > Subject: [Bioc-devel] No release svn repository for proFIA/plasFIA maintainer >

Re: [Bioc-devel] Error in DESeq Installation

Hi, I'm not having problems installing DESeq with Bioconductor 3.4 and R 3.3.1. Please try installing the package in a fresh R session, show the commands you ran and the output of sessionInfo(). Here's mine: > sessionInfo() R version 3.3.1 (2016-06-21) Platform: x86_64-pc-linux-gnu (64-bit)

Re: [Bioc-devel] svn repository for proFIA/plasFIA maintainer

The RoswellPark IT dept would not let this message through because of the 'no release' in the title. I've removed that so the message can (hopefully) get through ... Valerie On 10/25/2016 06:46 AM, Obenchain, Valerie wrote: > Hi Alexis, > > Instructions for working with the different svn

[Bioc-devel] No release svn repository for proFIA/plasFIA maintainer

Hello, My packages (proFIA, plasFIA) have been added in the last release of Bioconductor and I received an email which gave me svn credential. Howerver this email only sent me credential to devel version, and I found some minor issues that needs to be fixed on the release version, how may I

Re: [Rd] typo or stale info in qr man

On 25 Oct 2016, at 10:08 , Martin Maechler wrote: >> Wojciech Musial (Voitek) >>on Mon, 24 Oct 2016 15:07:55 -0700 writes: > >> man for `qr` says that the function uses LINPACK's DQRDC, while it in >> fact uses DQRDC2. > >

Re: [Rd] typo or stale info in qr man

And that missing functionality is that Linpack/Lapack routines do not return rank and have a different style of pivoting? For other aspects, the user-interface is very similar in dqrdc2 in R and in dqrdc in Linpack. Another difference seems to be that the final pivoting reported to the user is

Re: [Rd] typo or stale info in qr man

> Wojciech Musial (Voitek) > on Mon, 24 Oct 2016 15:07:55 -0700 writes: > man for `qr` says that the function uses LINPACK's DQRDC, while it in > fact uses DQRDC2. which is a modification of LINPACK's DQRDC. But you are right, and I have added to