[Rd] Issues of R_pretty in src/appl/pretty.c

See https://stat.ethz.ch/pipermail/r-devel/2017-August/074746.html for the origin of the example here. That pretty(c(-1,1)*1e300, n = 1e9, min.n = 1) gave 20 intervals, far from 1e9, but pretty(c(-1,1)*1e300, n = 1e6, min.n = 1) gave 100 intervals (on a machine), made me trace through the

Re: [Rd] Help to create bugzilla account

2017-08-11 16:00 GMT+02:00 Martin Maechler : >> Dmitriy Selivanov >> on Fri, 11 Aug 2017 17:33:31 +0400 writes: > > > Hi mailing list and R-core. Could someone from R-core please help me to > > create account in

Re: [Bioc-devel] [Bioconductor/Contributions] DMCHMM (#430)

Hi Farhad, Please be patient. We are going to review your package soon. Best, Nitesh > On Aug 11, 2017, at 11:40 AM, Farhad Shokoohi wrote: > > Hello, > > Can you update me on the status of reviewing my package DMCHMM? > > Thank you > -- > Farhad Shokoohi, >

Re: [Bioc-devel] EOW agenda: Aug 11

Oops. Sent to wrong address - sorry for the noise. Valerie On 08/11/2017 08:41 AM, Obenchain, Valerie wrote: # Sprint update # Builds - no Mac builds for devel today # SPB # Package Reviews # Mailing lists ## Support Site: Martin looking at this one: Rgraphviz installation fails

Re: [Bioc-devel] [Bioconductor/Contributions] DMCHMM (#430)

Hello, Can you update me on the status of reviewing my package DMCHMM? Thank you -- Farhad Shokoohi, Assistant Professor Office address: Department of Mathematics & Statistics Concordia University 1400 de Maisonneuve Blvd. West, Room LB915-1 Office: (514) 848-2424 ext. 4017 Fax: (514)

Re: [Bioc-devel] Vignette for xcms fails to build on tokay1

On 08/10/2017 04:14 PM, Neumann, Steffen wrote: Hi BioC, since that build error we have updated xcms to 2.99.6, and have started to convert the xcmsDirect vignette to Rmd. Now, we have the same kind of build error on the xcmsMsn vignette,

Re: [Rd] Help to create bugzilla account

Thanks Martin, I've received invitation and will create ticket soon. Regarding issue - basically the problem is that on operating systems which use glibc memory is not freed (R releases it, but system doesn't trim it). Setting corresponding environment variable (MALLOC_TRIM_THRESHOLD_) doesn't

Re: [Rd] Help to create bugzilla account

> Dmitriy Selivanov > on Fri, 11 Aug 2017 17:33:31 +0400 writes: > Hi mailing list and R-core. Could someone from R-core please help me to > create account in bugzilla? I would like to submit issue related to gc() to > wishlist. I will

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

Hi Gosia, The workflow package transition will take place a few weeks after the Software and the Data package transition. Till that point, I suggest you use SVN directly to commit to the server. Sorry for the confusion. Best, Nitesh > On Aug 11, 2017, at 7:10 AM, Malgorzata Nowicka

[Rd] Help to create bugzilla account

Hi mailing list and R-core. Could someone from R-core please help me to create account in bugzilla? I would like to submit issue related to gc() to wishlist. Related context is here - https://stat.ethz.ch/pipermail/r-devel/2017-July/074715.html -- Regards Dmitriy Selivanov

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

Hi, All is clear now. I will wait for the transition then. Thank you for all the help. Gosia > On 10 Aug 2017, at 18:52, Turaga, Nitesh > wrote: > > In the meantime, > > You can choose to simply checkout the SVN repo, and commit directly to it. > > Nitesh

Re: [Bioc-devel] git transition for projects with prior git history

The SVN repo is the most current version of your package as far as Bioconductor goes. Unfortunately, you have totally unrelated histories by the looks of it. (This should show up as an error, when you try to “merge”, i.e `git merge upstream/master`) I would suggest moving forward with the new

Re: [Rd] attributes on symbols

It's probably better to make it a runtime error, but note that it's not necessarily a bad idea to add attributes to singleton symbols. Those are used in Emacs Lisp for a variety of purposes. They just need strong conventions (part of that is that in Emacs many symbols are prefixed with a

Re: [Rd] attributes on symbols

Thanks for spotting this issue. The short answer is yes, adding attributes to a symbol is a bad idea and will be turned into a runtime error soon. Maintainers of packages that add attributes to symbols have been notified and some have already fixed their code. At least in one case the