We use this technique in a couple of places:
https://github.com/tidyverse/dbplyr/blob/6be777d8b23d588f19c98de52f4e58f16c2ef67e/R/zzz.R
Basic idea is to call registerS3method() manually, when needed - it's
just a little tricky because the suggested package may be loaded
either before or after your
On Thu, Dec 7, 2017 at 2:44 AM, Bill Denney wrote:
>
>> On Dec 6, 2017, at 07:45, Joshua Ulrich wrote:
>>
>> To avoid excessive dependencies, I would like to only register
>> foo.bar() if package A is installed at the time package B is
>> installed. If
Hi Bioconductor team,
I submitted my package to the Bioconductor and there are these errors and
warnings that appear in the bioconductor check but that doesn`t appear when I
compile. I believe these errors happen not because of my package but rather
because of the dependency of other
On 7 December 2017 at 17:56, Tomas Kalibera wrote:
|
| An update on this. Writing R Extensions does not recommend to have a
| space character in R_HOME. This means that on Windows one either should
| have SFN enabled (which is still the common case), or install into a
| directory that does
An update on this. Writing R Extensions does not recommend to have a
space character in R_HOME. This means that on Windows one either should
have SFN enabled (which is still the common case), or install into a
directory that does not have a space in its name (so specifically not
into
On 12/07/2017 10:48 AM, Maryam Hosseini Asanjan wrote:
Hi,
I am trying to install the 'IlluminaHumanMethylation450k.db' package the way it
is described at the bioconductor website
(https://bioconductor.org/packages/release/data/annotation/html/IlluminaHumanMethylation450k.db.html)
but it
1) It's supposed to be deprecated -- I'm not 100% sure why it's still in
release :-/ but will look into that
2) the FDb.InfiniumMethylation.hg19 package and
(eventually-forthcoming-when-I-get-around-to-it)
FDb.InfiniumMethylation.hg38 package are meant as its successor[s], hence
the error message:
Fixed in R-devel and R-patched.
Tomas
On 12/05/2017 05:58 PM, Tomas Kalibera wrote:
A quick workaround if you needed to execute R expressions in Windows
is calling RTerm directly.
But a fix should be available soon.
Tomas
On 12/05/2017 05:51 PM, Henrik Bengtsson wrote:
Sorry for not
On 07/12/2017 4:43 AM, Pijush Das wrote:
Hello Sir,
I have been trying to create a package in R.
When I have put the check option in R studio to check everything is ok that
time I have found
two warnings and three notes. Those are given below.
warnings:
1) * checking dependencies in R code
Bill, Duncan,
Thanks for the replies.
On Wed, Dec 6, 2017 at 12:51 PM, Duncan Murdoch
wrote:
> On 06/12/2017 8:44 AM, Bill Denney wrote:
>>
>>
>>> On Dec 6, 2017, at 07:45, Joshua Ulrich wrote:
>>>
>>> To avoid excessive dependencies, I would
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