[Rd] Unclosed parenthesis in grep.Rd

2018-03-04 Thread Hugh Parsonage
Lines 129-131: \code{grep(value = FALSE)} returns a vector of the indices of the elements of \code{x} that yielded a match (or not, for \code{invert = TRUE}. This will be an integer vector unless the input There should be a closing parenthesis after \code{invert = TRUE}

Re: [Bioc-devel] Updated Deprecated Package List for Bioc 3.7

2018-03-04 Thread Shepherd, Lori
Yes. You would probably want to make your own github repository to keep track of changes with the current version that is on our git.bioconductor.org server. We have already synced the repository access with the id l.geistlinger and the associated key - so you should already have read and

[Rd] Fwd: install.packages doesn't produce warnings unless qualified with utils::

2018-03-04 Thread David Hugh-Jones
On Sat, 3 Mar 2018 at 20:01, Joshua Ulrich wrote: > > > > My guess is that something (a package, console, etc) is masking > utils::install.packages(). > > This looks about right. On R in the terminal the warning is thrown. In Rstudio I have the problem, and: >