Re: [R-pkg-devel] can't reproduce cran-pretest error

2018-07-26 Thread Göran Broström
Inline: On 2018-07-26 21:11, Brad Eck wrote: Dear list, I'm having trouble reproducing errors from CRAN's pretests. I have a package on CRAN called epanet2toolkit that provides R bindings to a legacy simulation engine written in C. So far I've released two versions to CRAN without trouble.

Re: [R-pkg-devel] can't reproduce cran-pretest error

2018-07-26 Thread J C Nash
I think several of us have had similar issues lately. You might have seen my posts on reverse dependencies. It seems there are some sensitivities in the CRAN test setup, though I think things are improving. Last week I submitted optimx again. I don't think I changed anything but the date and

Re: [R-pkg-devel] can't reproduce cran-pretest error

2018-07-26 Thread Iñaki Úcar
Hi, a couple of things,: 1) Have you checked the rchk report for possible issues? https://raw.githubusercontent.com/kalibera/cran-checks/master/rchk/results/epanet2toolkit.out 2) Here there's a call to RENgettimeparam, which passes an empty character buffer:

Re: [Bioc-devel] BiocManager now on CRAN

2018-07-26 Thread Marcel Ramos
Hi Leo, Thanks for bringing that up and making those changes. We wanted to emphasize software packages first and then address experiment data and workflow packages since they are fewer anyhow. I will be adding those as additional files in the gist. To update experiment data packages, the

[R-pkg-devel] can't reproduce cran-pretest error

2018-07-26 Thread Brad Eck
Dear list, I'm having trouble reproducing errors from CRAN's pretests. I have a package on CRAN called epanet2toolkit that provides R bindings to a legacy simulation engine written in C. So far I've released two versions to CRAN without trouble. Now I'm making a third release, principally to

[Rd] Random behavior of mclapply

2018-07-26 Thread Thibault Vatter
Hi, I wondered about the behavior described in the following stackoverflow question: https://stackoverflow.com/questions/20674538/mclapply-returns-null-randomly More specifically, I would like to know if you ever considered the suggestion made in the comments of the first answer, namely to

Re: [R-pkg-devel] Get an empty note for "checking DESCRIPTION meta-information" when I run devtools::build_win()

2018-07-26 Thread Martin Maechler
> Eggleston, Barry > on Wed, 25 Jul 2018 21:53:30 + writes: > This is great news Roman. > The "rth" role stands for "Research team head", and I got it from the http://www.loc.gov/marc//relators/relaterm.html website. and it *IS* a correct role also in R, using non-API

Re: [Rd] Possible bug: R --slave --interactive stdin echo on Linux when stdin is a fifo

2018-07-26 Thread Gábor Csárdi
On Thu, Jul 26, 2018 at 2:47 PM wrote: [...] > Looks like this has to do with readline, which --interactive turns on. > If I use '--no-readline --interactive' (in that order) on Mac OS and > Linux I get no echo. Great! Makes sense. Thanks much. G. [...]

Re: [Rd] Possible bug: R --slave --interactive stdin echo on Linux when stdin is a fifo

2018-07-26 Thread luke-tierney
On Thu, 26 Jul 2018, Gábor Csárdi wrote: On Thu, Jul 26, 2018 at 1:43 PM wrote: On Thu, 26 Jul 2018, Gábor Csárdi wrote: On Thu, Jul 26, 2018 at 12:25 PM Barry Rowlingson wrote: On Thu, Jul 26, 2018 at 12:22 AM, Gábor Csárdi wrote: I am trying to control a background R session,

Re: [Rd] Possible bug: R --slave --interactive stdin echo on Linux when stdin is a fifo

2018-07-26 Thread Gábor Csárdi
On Thu, Jul 26, 2018 at 1:43 PM wrote: > > On Thu, 26 Jul 2018, Gábor Csárdi wrote: > > > On Thu, Jul 26, 2018 at 12:25 PM Barry Rowlingson > > wrote: > >> > >> On Thu, Jul 26, 2018 at 12:22 AM, Gábor Csárdi > >> wrote: > >>> I am trying to control a background R session, connected via a fifo

Re: [Rd] Possible bug: R --slave --interactive stdin echo on Linux when stdin is a fifo

2018-07-26 Thread luke-tierney
On Thu, 26 Jul 2018, Gábor Csárdi wrote: On Thu, Jul 26, 2018 at 12:25 PM Barry Rowlingson wrote: On Thu, Jul 26, 2018 at 12:22 AM, Gábor Csárdi wrote: I am trying to control a background R session, connected via a fifo / named pipe. Is the fifo significant here? If I read the same R

Re: [Rd] Suggestion for updating `p.adjust` with new method (BKY 2006)

2018-07-26 Thread Martin Maechler
> Xiaoqing Claire Rong-Mullins > on Mon, 23 Jul 2018 12:03:55 -0400 writes: > Dear R contributors, > I suggest adding a new method to `p.adjust` ("Adjust P-values for Multiple > Comparisons", > https://stat.ethz.ch/R-manual/R-devel/library/stats/html/p.adjust.html).

Re: [Rd] Possible bug: R --slave --interactive stdin echo on Linux when stdin is a fifo

2018-07-26 Thread Gábor Csárdi
On Thu, Jul 26, 2018 at 12:25 PM Barry Rowlingson wrote: > > On Thu, Jul 26, 2018 at 12:22 AM, Gábor Csárdi wrote: > > I am trying to control a background R session, connected via a fifo / > > named pipe. > > Is the fifo significant here? If I read the same R code from a file > via `<` I get

Re: [Rd] Possible bug: R --slave --interactive stdin echo on Linux when stdin is a fifo

2018-07-26 Thread Barry Rowlingson
On Thu, Jul 26, 2018 at 12:22 AM, Gábor Csárdi wrote: > I am trying to control a background R session, connected via a fifo / > named pipe. Is the fifo significant here? If I read the same R code from a file via `<` I get the input echoed (R 3.4.4, Ubuntu). Barry