Re: [Rd] Documentation examples for lm and glm

2018-12-14 Thread David Hugh-Jones
I would argue examples should encourage good practice. Beginners ought to learn to keep data in data frames and not to overuse attach(). Experts can do otherwise at their own risk, but they have less need of explicit examples. On Fri, 14 Dec 2018 at 14:51, S Ellison wrote: > FWIW, before all

Re: [Rd] Documentation examples for lm and glm

2018-12-14 Thread S Ellison
FWIW, before all the examples are changed to data frame variants, I think there's fairly good reason to have at least _one_ example that does _not_ place variables in a data frame. The data argument in lm() is optional. And there is more than one way to manage data in a project. I personally

[Bioc-devel] Cairo Error on MacOS on Bioc 3.9

2018-12-14 Thread Christian Mertes
Dear Bioconductor team, I noticed that my package OUTRIDER and also some others have an issue with the Cairo package. The error is: .onLoad failed in loadNamespace() for 'Cairo', details:   call: dyn.load(file, DLLpath = DLLpath, ...)   error: unable to load shared object

Re: [Bioc-devel] NEWS not updated on devel site

2018-12-14 Thread Shepherd, Lori
We will look into the issue. Thank you for making us aware. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of

[Bioc-devel] NEWS not updated on devel site

2018-12-14 Thread Kristoffer Vitting-Seerup
I just noticed that on the devel site for my package the NEWS file linked to in the "Documentation" tab (linking to this ) is outdated. The