Hi,
Our package SINCE has got TIMEOUT notice several times, but it only took a few
seconds on my local Mac system.
And it also states require Rmpi for Windows but not for Mac or Linux, how
should I fix this?
Thanks
Jie
___
Bioc-devel@r-project.org
I installed R 3.6 beta and can confirm that the clashes between the row/colSums
and row/colMeans generics from Matrix and BiocGenerics are gone. Excellent!
Thanks Michael.
H.
On 4/9/19 11:15, Michael Lawrence wrote:
This should be in trunk and the 3.6 release branch.
On Thu, Mar 28, 2019 at
On Sun, Apr 14, 2019 at 6:30 PM Spencer Brackett <
spbracket...@saintjosephhs.com> wrote:
> Good evening,
>
> I am having problems with downloading the package used to generate
> regression models on R. The following is the error message I received. I
> tried installing BiocManager instead as
Good evening,
I am having problems with downloading the package used to generate
regression models on R. The following is the error message I received. I
tried installing BiocManager instead as suggested, but this too did not
work. Any ideas?
The downloaded binary packages are in
In current definition of function 'stopifnot' in stop.R in R 3.6.0 beta
(https://svn.r-project.org/R/branches/R-3-6-branch/src/library/base/R/stop.R)
or R devel (https://svn.r-project.org/R/trunk/src/library/base/R/stop.R), if
'exprs' is specified, cl[[1]] is quote(stopifnot) . To be more
integrate(f, xmin, xmax) will have problems when f(x) is 0 over large parts
of (xmin,xmax). It doesn't have any clues to where the non-zero regions
are. It computes f(x) at 21 points at each step and if all of those are
zero (or some other constant?) for a few steps, it calls it a day. If you
Dear all,
This is the first time I am posting to the r-devel list. On
StackOverflow, they suggested that the strange behaviour of integrate()
was more bug-like. I am providing a short version of the question (full
one with plots: https://stackoverflow.com/q/55639401).
Suppose one wants
Your strand factor only has level "+", but should have levels "+", "-", "*".
Use GenomicRanges::strand() to construct the right thing.
Martin
On 4/14/19, 3:01 AM, "Bioc-devel on behalf of Dario Strbenac"
wrote:
Good day,
Although the documentation states "Generally not used
Hi Sam,
On 4/11/19 10:47, Samuela Pollack wrote:
> Dear Bioconductor,
>
> We are deprecating part of a package. I am following the guidelines in
> the "Function Deprecation Guidelines" page at bioconductor.org and I
> have a few questions:
>
> (i) Deprecating a S4 method which has the same name
Good day,
Although the documentation states "Generally not used directly", I'm trying it.
A small example fails because the input is evaluated to be in the wrong format,
but it doesn't seem so when I look at the variable type of strand.
debug(GAlignments)
GAlignments("chr1", 1L, strand =
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