Re: [Bioc-devel] Website Not Updating

Hi, I added �Phylogenetics� and �SNP� to BiocViews of my package sitePath in both release and develop version. Wonder if that�s causing the problem. Because �Phylogenetics� is a legit BiocViews so far as I know but was never used before. And changing BiocViews is not �bug fix� update which

[Bioc-devel] updating package on the development version

Hi, I am trying to update previous release of my package (GISPA) on the development version. I pushed the changes and new release GISPA 1.13.1 following https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ But, I do not see the change on the bioconductor development

Re: [Rd] valgrind false positive on R startup?

Great, that works for me, thanks! If this is an issue with glibc, has it been reported to the glibc devs, and are they working on a fix? On Tue, Jun 9, 2020 at 9:12 PM Prof Brian Ripley wrote: > It is known, with a known workaround, see e.g. >

[Rd] stats::screeplot suggestion

Hi Here is a suggestion/request for stats::screeplot * Please allow to change xlab and ylab. The attached file does that, and maintains current behavior. Reason: strictly speaking, ylab should be "Variance" (singular). It would also be better to have an explicit label for the X axis:

[Bioc-devel] Website Not Updating

Hello All, It was brought to our attention that our website was not updating over the last few days. You may see outdated or missing package landing pages. We are working on a fix that should be implemented by the end of the day today. Cheers, Lori Shepherd Bioconductor Core Team Roswell

[Bioc-devel] Bioconductor package devel site not updating

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Re: [Bioc-devel] Bioconductor credentials issue

Hi Chris, This is a very strange problem which I haven’t come across before. But let me say this though, the fact that this email "benjamin.haibe.ka...@utoronto.ca ” is connected to your username, Github ID and has your SSH keys is not correct. I

Re: [R-pkg-devel] R_MAKEVARS_USER fail to pass down to sub-makes?

Thank you Jim, That was the problem indeed. Too bad it is not mentioned in the manual. On Wed, Jun 17, 2020 at 8:33 PM Jim Hester wrote: > > I think the issue is likely that you seem to be using a relative path to the > R_MAKEVARS_USER file, it needs to be an absolute path as the installation

[Rd] fixed url for R-release windows binaries

Dear R-developers, Could we have a fixed url to fetch current R-release windows binaries? Like we do for R-devel https://cloud.r-project.org/bin/windows/base/R-devel-win.exe Something like the following would do https://cloud.r-project.org/bin/windows/base/R-release-win.exe Thank you, Jan

[Bioc-devel] How to set dimnames inside constructor function?

Hello everyone, This is my first attempt at writing a package (wrote it in S3 and now porting it to S4). So it might be a trivial question. I am trying to extend the SummarizedExperiment object for calcium imaging data (no gene names as features). Features/rownames are the number of the

[Bioc-devel] Maintainer transfer

Hi all, Recently, the maintainership for the SIAMCAT package on Bioconductor was transferred from Konrad Zych (konrad.z...@embl.de) to me and the DESCRIPTION file in the Bioconductor repository was updated already. Therefore, I tried to activate my account in the BiocCredentials app, but it