Re: [Bioc-devel] SplicingFactory: problem with release bugfix build

2021-06-25 Thread Oleksii Nikolaienko
Hi Endre, I guess it's because it hasn't been built yet. I'm also waiting for the build, but it looks like it happens once in three days, is that correct? Best, Oleksii On Fri, 25 Jun 2021 at 22:56, Endre Sebestyen wrote: > Hi all, > > I fixed some bugs in our package SplicingFactory, both for

Re: [R-pkg-devel] [External] R package submission fails due to using LaTeX functions that have not been implemented for building pdfs (not due to mathjaxr)

2021-06-25 Thread Marc Scherstjanoi
Thank you for your answers. Putting \if{html}{\eqn{}} before \mjeqn{}{} works! Kind regards, Marc - Ursprüngliche Mail - Von: "Viechtbauer, Wolfgang (SP)" An: "Richard M. Heiberger" , "Marc Scherstjanoi" CC: r-package-devel@r-project.org Gesendet: Freitag, 25. Juni 2021 20:30:10

[Bioc-devel] SplicingFactory: problem with release bugfix build

2021-06-25 Thread Endre Sebestyen
Hi all, I fixed some bugs in our package SplicingFactory, both for devel and release branches. I also pushed to github and bioconductor master and release. However, the devel build seems to be ok: https://bioconductor.org/checkResults/devel/bioc-LATEST/SplicingFactory/ but the release is still

[Bioc-devel] FW: coMET problems reported in the Multiple platform build/check report for BioC 3.13

2021-06-25 Thread Martin, Tiphaine
Hi, I have a question. I receive an error message for my COMET package, but when I click on the link. I do not find the error. Could you advise me what I need to do ? Thanks Tiphaine -Original Message- From: bbs-nore...@bioconductor.org Sent: Friday, June 25, 2021 3:15 PM To:

Re: [R-pkg-devel] [External] R package submission fails due to using LaTeX functions that have not been implemented for building pdfs (not due to mathjaxr)

2021-06-25 Thread Viechtbauer, Wolfgang (SP)
That doesn't seem to work for me (or I am not following this suggestion properly). But putting \if{html}{\eqn{}} before \mjeqn{}{} does. A bit of a hackish solution, but if it works, it works. Not sure why \mjeqn{}{} at the beginning of a paragraph actually leads to a line break, but it's yet

[Rd] SET_COMPLEX_ELT and SET_RAW_ELT missing from Rinternals.h

2021-06-25 Thread Konrad Siek
Hello, I am working on a package that works with various types of R vectors, implemented in C. My code has a lot of SET_*_ELT operations in it for various types of vectors, including for CPLXSXPs and RAWSXPs. I noticed SET_COMPLEX_ELT and SET_RAW_ELT are defined in Rinlinedfuns.h but not

Re: [R-pkg-devel] [External] R package submission fails due to using LaTeX functions that have not been implemented for building pdfs (not due to mathjaxr)

2021-06-25 Thread Richard M. Heiberger
> One more question. If I use mjeqn at the beginning of a paragraph it > automatically sets a line break afterwards. > Any idea what I can do to prevent this? follow it with \vspace*{1ex} to back up one line. Rich > On Jun 25, 2021, at 07:51, Marc Scherstjanoi > wrote: > > Hi Wolfgang,

Re: [R-pkg-devel] check error with r-devel-windows-ix86+x86_64 due to missing Hmisc package

2021-06-25 Thread Duncan Murdoch
I'm back in civilization for a few days, and have submitted a PR to Hmisc: https://github.com/harrelfe/Hmisc/pull/143 . Duncan Murdoch On 23/06/2021 8:51 a.m., Gilbert Ritschard wrote: Thanks for this suggestion. Pushing the investigation a bit further, I found that the error resulted in

Re: [R-pkg-devel] Assignments to the global environment and use of on.exit

2021-06-25 Thread Siddhanta Phuyal
Hello, Thank You. It worked. The package has been submitted to CRAN. Thank You for your helpful feedback. On Tue, Jun 22, 2021 at 10:00 PM Oliver Madsen wrote: > The problem is solved by either > > 1) creating an environment variable within the package namespace (as you > would a function)

Re: [R-pkg-devel] speeding up package code/build/test cycle

2021-06-25 Thread Greg Minshall
Dirk and Duncan, thanks. the slight nudge towards =R CMD INSTALL= is a helpful reminder, and hewing close to the straight-and-narrow is undoubtedly a good thing. cheers, Greg __ R-package-devel@r-project.org mailing list

Re: [R-pkg-devel] R package submission fails due to using LaTeX functions that have not been implemented for building pdfs (not due to mathjaxr)

2021-06-25 Thread Marc Scherstjanoi
Hi Wolfgang, thank you for this information. I will try with \mjtdeqn and stick to the intended latex functions for building the pdf. Moreover, we will bring up the more complicated equations in a vignette pdf. One more question. If I use mjeqn at the beginning of a paragraph it automatically

Re: [R-pkg-devel] speeding up package code/build/test cycle

2021-06-25 Thread Enrico Schumann
On Thu, 24 Jun 2021, Greg Minshall writes: > hi. > > when developing packages, my current work flow is to change the code, > (re-)build the package, detach/load the package, test (to find the > N+1'st bug, sigh). > > the building step takes tens of seconds. > > is there an obvious way to present

Re: [Rd] S3 weirdness

2021-06-25 Thread Johannes Rauh
Good morning, I would argue that in this specific simple example, R does the less confusing thing from a user's perspective (maybe not from a programmer's or philosopher's perspective): When using a function from a package that has not been loaded before and when this package creates an

Re: [Rd] S3 weirdness

2021-06-25 Thread Gabriel Becker
On Thu, Jun 24, 2021 at 4:48 PM Gabor Grothendieck wrote: > The fact that zoo:: in one part of the code has a side effect in > another seems not to be in the spirit of functional programming or > modularity. > While this is true, there is no way I know of for a package function to...well,

Re: [R-pkg-devel] speeding up package code/build/test cycle

2021-06-25 Thread Tomas Kalibera
On 6/24/21 11:31 PM, Duncan Murdoch wrote: On 24/06/2021 4:52 p.m., Dirk Eddelbuettel wrote: On 24 June 2021 at 16:31, Duncan Murdoch wrote: | This does the full compile again, so it's slow. ccache fixes that (as it has its own cache). It also works on macOS. I haven't tried ccache: