Thanks Mike. I never heard about useEnsembl() before. That sounds like a
nice addition. There are a few packages maintained by the core team
(OrganismDbi, GenomicFeatures, etc...) where we still use useMart().
These packages are victims of the Ensembl Mart flakiness almost every
day on the
> Martin Maechler
> on Fri, 5 Nov 2021 17:55:24 +0100 writes:
> Tomas Kalibera
> on Fri, 5 Nov 2021 16:15:19 +0100 writes:
>> On 11/5/21 4:12 PM, Duncan Murdoch wrote:
>>> On 05/11/2021 10:51 a.m., Henrik Bengtsson wrote:
I'm trying to reuse some of the
> Tomas Kalibera
> on Fri, 5 Nov 2021 16:15:19 +0100 writes:
> On 11/5/21 4:12 PM, Duncan Murdoch wrote:
>> On 05/11/2021 10:51 a.m., Henrik Bengtsson wrote:
>>> I'm trying to reuse some of the translations available in base R by
>>> using:
>>>
>>>
Hi,
I would like to request to add a new maintainership or change the
maintainership completely for the decoupleR package (
https://www.bioconductor.org/packages/release/bioc/html/decoupleR.html).
New maintainer information:
- Name: Pau Badia-i-Mompel
- email: pau.ba...@uni-heidelberg.de
On 11/5/21 4:12 PM, Duncan Murdoch wrote:
On 05/11/2021 10:51 a.m., Henrik Bengtsson wrote:
I'm trying to reuse some of the translations available in base R by
using:
gettext(msgid, domain="R")
This works great for most 'msgid's, e.g.
$ LANGUAGE=de Rscript -e 'gettext("cannot get
Le 05/11/2021 à 15:51, Henrik Bengtsson a écrit :
I'm trying to reuse some of the translations available in base R by using:
gettext(msgid, domain="R")
This works great for most 'msgid's, e.g.
$ LANGUAGE=de Rscript -e 'gettext("cannot get working directory", domain="R")'
[1] "kann das
On 05/11/2021 10:51 a.m., Henrik Bengtsson wrote:
I'm trying to reuse some of the translations available in base R by using:
gettext(msgid, domain="R")
This works great for most 'msgid's, e.g.
$ LANGUAGE=de Rscript -e 'gettext("cannot get working directory", domain="R")'
[1] "kann das
I'm trying to reuse some of the translations available in base R by using:
gettext(msgid, domain="R")
This works great for most 'msgid's, e.g.
$ LANGUAGE=de Rscript -e 'gettext("cannot get working directory", domain="R")'
[1] "kann das Arbeitsverzeichnis nicht ermitteln"
However, it does not
On 05/11/2021 8:00 a.m., Dario Strbenac via R-devel wrote:
Good day,
as.data.frame is documented on ?table and on ?as.data.frame (for list and
matrix inputs). For inputs of list type and matrix type, there is an argument
optional, which allows preservation of column names. If the input is a
Good day,
as.data.frame is documented on ?table and on ?as.data.frame (for list and
matrix inputs). For inputs of list type and matrix type, there is an argument
optional, which allows preservation of column names. If the input is a table,
there is no such option. Could the API be made
Examining more closely, it's a NOTE produced by R CMD check --
originally I had thought it was a WARNING, which I think would have
been too strong for this case. A NOTE actually seems fine, on second
thought.
For a tiny bit of context, it's common for us to issue messaging
around some state
Thanks Mike and Hervé for the answers!
I’ll give it a go.
Best,
Nico
> On 4 Nov 2021, at 23:02, Mike Smith wrote:
>
> Hi Nico,
>
> Please try changing your calls to useMart() to useEnsembl(). That function
> has some checking that should detect this problem (it's real for all Ubuntu
>
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