Prof Brian Ripley wrote:
On Fri, 31 Oct 2008, Peter Dalgaard wrote:
Corrado wrote:
I apologise The dsn is not empty, the database the dsn connects
to is
empty!
You get the same error when connecting to a populated database.
Do I? I wouldn't know...
(You are _still_ not providing
in the
CHANGES or NEWS file to suggest this).
...
Hmm, does it help with a suitably placed tcl(update) or
tcl(update,idletasks)?
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University
zdotu works correctly: this provides a compatibility
test of compiler return conventions.
which suggests that the expected failure is catastrophic, and looking at
the code, there's a fuzz of 1e-10 which would seem to be about 1e5 times
larger than required.
--
O__ Peter Dalgaard
you well enough to expect that you'd come up
with a patch for axis.date...
The issue is that it is clipping the at values
z - z[z = range[1] z = range[2]]
but not the corresponding labels. A slight complication is that labels
can be absent or TRUE/FALSE.
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O__ Peter Dalgaard
hadley wickham wrote:
| is.matrix| returns |TRUE| if |x| is a matrix and has a |dim dim.html|
attribute of length 2) and |FALSE| otherwise
That's confusing! In what situations is x a matrix but does not have
a dim attribute?
Hadley
Yes, I suspect a typo there.
--
O__ Peter
using expand.grid, writing the data to a file with
write.table and reading it back in during lecture with read.table. Odds
ratio turned upside down...
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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do FALSE-foo.
This is clearly not a very important issue, but it might bear some
thinking about.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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(*) \(*) -- University of Copenhagen Denmark Ph
in data frames). If you start disallowing
some of them again, well, that way lies madness!
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45
Martin Maechler wrote:
PD == Peter Dalgaard [EMAIL PROTECTED]
on Tue, 18 Nov 2008 00:00:40 +0100 writes:
PD Martin Maechler wrote:
But in spite of all that I agree that I'd have liked
`FALSE` - whatever to signal an error about the fact
that it is a reserved word
' on things that are real errors.
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - ([EMAIL PROTECTED]) FAX: (+45
this.
Platform?
Does
MAKE=make -j8 R CMD INSTALL ...
not work?
(Beware: Here there be Tygers. Parallel makes have their surprises)
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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Peter Dalgaard Øster Farimagsgade 5, Entr.B
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907
Prof Brian Ripley wrote:
3) Grep the installed help for internal constructs, e.g.
grep nornal-bracket installed-package/help/*
I see that you're following the time-honored empirical law, that every
spelling flame contains at least one misteak itself...
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O__ Peter Dalgaard
it in the bug tracker could be my failing.
D
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - (p.dalga...@biostat.ku.dk
.
However as far as I can google, Code Page 65001 _is_ UTF-8...
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - (p.dalga
;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
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activity, and did trip up my Fedora laptop
slightly. H
-p
Martyn
On Wed, 2008-12-17 at 22:07 -0500, Duncan Murdoch wrote:
On 17/12/2008 9:47 PM, Duncan Murdoch wrote:
On 17/12/2008 8:56 PM, Peter Dalgaard wrote:
Ben Bolker wrote:
I can get the errors to happen on Ubuntu 8.10
Martyn Plummer wrote:
On Thu, 2008-12-18 at 10:57 +0100, Peter Dalgaard wrote:
Martyn Plummer wrote:
This has all the hallmarks of a bug I found and fixed in R-devel
(r46998). I did not port the patch over to the R release branch because
I could not reproduce the bug.
[]
Yes, this does
{\mu}g/l in other places, but that comes out as
mug/l which looks like an inverted measure for coffee cups. I probably
gave up deciding a good incantation for microgram per liter in text
mode. Possibly \eqn{\mu}{u} is the best on can do.
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all outcomes
are equally likely under the corresponding y~1 model.
-p
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
on console.
foos - c(aaa, bbb, ccc)
cat(sapply(foos,
function(foo) {
sprintf(name: %-18s upper: %s\n,
foo,
toupper(foo))
}), sep=)
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c
document itself needs a verification process to ensure that it is correct.
Best,
-pd
Best regards, Bob
-Original Message-
From: Peter Dalgaard [mailto:p.dalga...@biostat.ku.dk]
Sent: Saturday, January 24, 2009 4:53 AM
To: Muenchen, Robert A (Bob)
Cc: r-h...@r-project.org
Subject
Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - (p.dalga...@biostat.ku.dk) FAX: (+45) 35327907
bug to a completely different point in space an time.
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - (p.dalga
).
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is not available on
your system
(a) Which system?
(b) Do you have
capabilities(tcltk)
tcltk
TRUE
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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crashes?
Is it possible to put the file on a webpage (or maybe a subset showing
the same syptoms)? Without it, the problem is not really reproducible by
anyone but you.
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/listinfo/r-devel
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Marc Schwartz [EMAIL PROTECTED] writes:
On Fri, 2005-06-10 at 14:57 +0100, Prof Brian Ripley wrote:
On Fri, 10 Jun 2005, Peter Dalgaard wrote:
The next version of R will be released (barring force majeure) on June
20th, with beta versions available starting Monday.
Please do
to be bigger than *n, so I don't
see how you'd get that far.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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~~ - ([EMAIL
of all bug reports to
r-devel, but there's not going to be a nice way to save the followups
automagically. Users will also likely be requested to obtain a
password and login before submitting a bug.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept
?) but it
could be worth it anyway. The main thing that it would require is an
extended Yacas API which allows you to create Yacas objects from C
code.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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to add that this sounds very exciting.
I agree!
I am working on a Java port at the moment. I will try to make some
time later this evening
or perhaps somewhere this week.
Sounds good. I wish I had more time for this, but there's a deadline
approaching...
--
O__ Peter Dalgaard
builddir?
Perhaps get rid of the @ in @if and the 2/dev/null so we get to see a
bit more of the the error messages.
What you're seeing is consistent with an error return from find, I
think. So perhaps look at the permission in the srcdir? Just a
conjecture.
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O__ Peter Dalgaard
with
this. Here is a transcript from the debug session:
Browse[1] theP
[1] 1
Browse[1] yleft[dataIndex]
[1] 3
Browse[1] rbinom(1,3,1)
[1] 3
Browse[1] rbinom(1,yleft[dataIndex], theP)
[1] NaN
Strange, huh?
What is theP - 1?
rbinom(1,3,1+1e-10)
[1] NaN
1+1e-10
[1] 1
--
O__ Peter
(5,5), method=L-BFGS-B)
optim(f, lower=c(0,0), par=c(5,5), method=L-BFGS-B, hess=T)
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
then bt after the segfault. (Make sure that things are compiled with
-g option)
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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a text menu.
So something appears not right with your Tcl/Tk configuration.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
and see what causes
configure to conclude that you cannot run C compiled programs.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
-dev-web/trunk/index.html).
As usual, it is strongly preferred if bugs are discovered prior to the
release and not immediately afterwards! Please do try the
alpha/beta releases and report back any errors.
On behalf of the R Core Team
Peter Dalgaard
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O__ Peter Dalgaard
(2^48, 256TB)?.
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Martin Maechler [EMAIL PROTECTED] writes:
PD == Peter Dalgaard [EMAIL PROTECTED]
on 02 Sep 2005 18:48:24 +0200 writes:
PD Milton Lopez [EMAIL PROTECTED] writes:
I appreciate the update. We will consider using Linux,
which leads me to one more question: what
!
H Did you ever tell us
1) Exactly what your platform is
2) How you generated the shared library (R CMD SHLIB, or?)
3) What you did to load it into R
?
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, 0.8 + 0.9 * 0.95 B 1
And the problem was???
You may not like the graphical representation, but it is not a bug.
Just use
print(summary(fit),symbolic.cor=FALSE)
to get rid of it.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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] 2
$minor
[1] 2.0
$year
[1] 2005
$month
[1] 09
$day
[1] 12
$svn rev
[1] 35558
$language
[1] R
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information. You could try running under gdb and see where things go
wrong for you.
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(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
routine 'DGEBRD' gave error code -10
Execution halted
This happens on both x86_64 and x86 installs of FC4.
I have a strong sense of deja vu regarding this error.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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the
installed version to your hardware, if it could narrow the choice down
to a dozen versions or so. It's not easy though, since not only the
CPU/FPU types factor in, but also cache sizes and memory speeds.
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José Matos [EMAIL PROTECTED] writes:
Peter Dalgaard wrote:
Hmm. Doesn't look like it is actually working, though. Install
lapack-devel, configure --with-lapack, and make check dies with
running code in 'base-Ex.R' ...make[4]: *** [base-Ex.Rout] Error 1
make[4]: Leaving directory
() and by() both die for lack of memory.
Any suggestions on how to do what I want, without using SAS?
Have you tried aggregate()?
Alternatively, you migth split on interaction(, drop=TRUE)
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77
fax: +33 (0)4 72 91 34 61
portable: +33 (0)6 84 10 64 10
http://www.lyon.inserm.fr/371/
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and it shouldn't. (Try it for smaller values of 8)
y~(x1+x2+x3+x4+x5+x6+x7+x8)^2 should be same as the second formula,
modulo the syntax error.
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a Fortran compiler.
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shlib_cxxldflags=-shared
fi
Now, the natural guess is that ${G77} wasn't set earlier on, so look
for the place where it figures out the Fortran compiler.
On Friday 14 October 2005 14:19, Peter Dalgaard wrote:
Rainer M Krug [EMAIL PROTECTED] writes:
Hi
I hope this is the right list
. The
thing that might help would be to remove all the Rtmp* directories at
boot and periodically before PID wraparound.)
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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(*) \(*) -- University of Copenhagen
your apply() construct returns a vector with
the right names, but loses the name of the names, at which point there
is no way to retrieve them.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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(binomial) observation or
79 (Bernoulli) ones??
So BIC may not be defined. In which sense is this a bug, anyway? The
BIC function is defined inside the nlme package which is not designed
to work with anything but continuous data.
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/mailman/listinfo/r-devel
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in the same location as the binary. If one is tampered with, the other
one could be too. For the main release, I always send the md5sums via
the mailing lists.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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tend to be server machines with little emphasis on quietness,
where the single-CPU machines have heatpipes and whatnot.
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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.
But what is the wish?
You mean get it upgraded to xml2 and glade2? Patches would likely be
accepted...
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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-libf2c-32-3.2.3-47.fc4
[EMAIL PROTECTED] ~]$ rpm -qf /usr/lib/gcc-lib/i386-redhat-linux/3.2.3/libg2c.a
compat-gcc-32-g77-3.2.3-47.fc4
(Notice that they're not the same...)
So the point is to install the libf2c thingie, whatever the name is on
RHEL4.
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O__ Peter Dalgaard Øster
-project.org/mirrors.html;mirror near
you/A. BR
This corresponds to the file named BSetupR.exe/B or
Brw.exe/B in pre-2.2.0 releases./TD
/TR
/TBODY
/TABLE
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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to be
else {
x[[jj]] - vjj[FALSE]
length(x[[jj]]) - nrows
x[[jj]][iseq] - vjj
}
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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(*) \(*) -- University
(A,alpha) mapply(ssd, A, alpha)
(Anybody want to try their hand on writing a general Vectorize()
function? I.e. one that allowed
outer(Avec, alphavec, Vectorize(ssd))
to work.)
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
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) also read the section on what is a bug and what is not a bug in
http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html#R%20Bugs
(c) If you are that new to compiling R on FC4, why not use the RPMs
from Fedora Extra?
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c
don't usually get
.sig's added to those. We had dozens of messages from VZ on the
regular mail lists, all without a formal .sig, so this would seem to
be the least appropriate time to complain.
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[EMAIL PROTECTED] writes:
Hi,
On 03 Nov 2005 12:41:53 +0100, Peter Dalgaard [EMAIL PROTECTED] wr=
ote:
[EMAIL PROTECTED] writes:
We do not usually put features in R which are specific to just some
distributions of some OSes, and in this case to one editor on those.
We do
Vaidotas Zemlys [EMAIL PROTECTED] writes:
Hi,
On 04 Nov 2005 13:51:56 +0100, Peter Dalgaard [EMAIL PROTECTED] wrote:
One further thought about this:
On SUSE,
rpm -qif /usr/share/mime/
points at
http://www.freedesktop.org/wiki/Software_2fshared_2dmime_2dinfo
So I guess
Paul Roebuck [EMAIL PROTECTED] writes:
On Fri, 4 Nov 2005, Peter Dalgaard wrote:
Vaidotas Zemlys [EMAIL PROTECTED] writes:
[SNIP]
Also
6. Rprofile files .Rprofile or Rprofile.
.Renviron?
Yes, but you seem to have forgotten to keep r-devel in the circuit...
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, linux-gnu
status
major2
minor2.0
year 2005
month10
day 06
svn rev 35749
language R
.libPaths()
[1] /home/bs/pd/Rlibrary /usr/lib64/R/library
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.
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(2,2,3,2)
i - 2:3
ndim - length(dim(x))
ix - as.list(rep(TRUE, ndim))
ix[[1]] - i
do.call([, c(list(x), ix))
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]]
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//libR.so
#8 0x2ac7e712 in Rf_eval () from /usr/lib64/R/lib//libR.so
I.e. it is within internal C code from the nnet package, so the error
most likely belongs to the package, not R at large.
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page has:
For 'qt' only values of at least one are currently supported.
and someone must have written that...
R does have pt for df 1, so a temporary fix using uniroot() seems
doable.
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called a different name so it isn't
affected by this argument).
Hin-Tak
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beta during the beta period. The
release script ends with
cd $SRCDIR
echo $REL Patched VERSION
svn commit -m setup patch version
so I believe this is a temporary situation and that r-patched will
become 2.2.1 Patched next time around.
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Ole F. Christensen [EMAIL PROTECTED] writes:
Brain, Thank you very much for your help.
*
You seem to be using call-by-value semantics rather than
call-by-name...
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099
.
--
O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907
Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907
Peter Dalgaard [EMAIL PROTECTED] writes:
Robin Hankin [EMAIL PROTECTED] writes:
Hi
I am having difficulty with eigen() on R-devel_2006-01-05.tar.gz
Specifically, in R-2.2.0 I get expected behaviour:
eigen(matrix(1:100,10,10),FALSE,TRUE)$values
[1] 5.208398e+02
Hin-Tak Leung [EMAIL PROTECTED] writes:
Peter Dalgaard wrote:
Robin Hankin [EMAIL PROTECTED] writes:
Hi
I am having difficulty with eigen() on R-devel_2006-01-05.tar.gz
Specifically, in R-2.2.0 I get expected behaviour:
eigen(matrix(1:100,10,10),FALSE,TRUE)$values
[1
)
Which is in fact Pentium 4 EMT (not to be confused with ia64 which is
Itanium, AFAIR).
I don't see how anyone could figure that out from the information
given, though...
-p
On Tue, 10 Jan 2006, Robin Hankin wrote:
On 10 Jan 2006, at 14:14, Peter Dalgaard wrote:
Strange
that it works...
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907
to character. I'm not sure whether there could
be a rationale for it, but it isn't S-PLUS compatible (not 6.2.1
anyway, which is the most recent one that I have access to).
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph
ADDRESSES ON BUG REPORTS IS BLOODY UNFORGIVEABLE!
G
--
O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - ([EMAIL
to break things in unexpected places if you change it.
One could perhaps argue for a data.frame method, since coercion
operations on dataframes are rare and that is a case where people get
factors where they wanted character columns.
Agreed.
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O__ Peter Dalgaard Øster
compat-gcc).
And: It is not considered a bug that versions of R do not work/build
with OS releases which didn't exist at the time
--
O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University
://stat.ethz.ch/mailman/listinfo/r-devel
--
O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~ - ([EMAIL PROTECTED
-point distribution at
zero. Same thing as any(logical(0)) etc., really.
--
O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
]) : object a not found
and that you need expression(a[1]) instead. I think this implies that
you'd have to use as.expression(bquote()) which is a bit nasty.
I'm not sure this isn't a bug in boxplot, though.
--
O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept
this error is consistent in various version and os.
What's wrong with it???
(pnorm(0.01,mean=0.04,sd=0.3) - pnorm(0,mean=0.04,sd=0.3))/.01
[1] 1.318040
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O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
should
never be taken lightly as there could be people using the current
ones.
Just another little seed.
...which is connected to my grievances with attach() c the other day.
Something about transform() just isn't The Right Way.
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O__ Peter Dalgaard Øster Farimagsgade 5
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