Re: [Rd] filenames with special characters in the R/ directory of a package?
On Fri, Feb 12, 2010 at 5:35 AM, blue sky bluesky...@gmail.com wrote: According to R-exts.pdf (page 3): For maximal portability filenames should only contain only ASCII characters not excluded already (that is A-Za-z0-9._!#$%+,;=...@^(){}’[] I have some files with special characters like '[' and '%' e.g. '[.set.R'. That character list in your extract from R-exts.pdf is a list of non-special characters. And [ and % are in there. It's clarification of three sentences previous, which says: the characters ‘’, ‘*’, ‘:’, ‘/’, ‘’, ‘’, ‘?’, ‘\’, and ‘|’ are not allowed in file names I also have some functions that also have those special characters defined in those files exported in NAMESPACE. I use the following command to install. And I get no warning or errors. R CMD INSTALL -d -l my_custom_dir my.pkg I then load the package. I get the following errors and warnings. I changed a file to one without these special characters. Then the corresponding warning/error disappears. Is it the case that there should never be files with special characters as names? library(my.pkg) Error in namespaceExport(ns, exports) : undefined exports: %is% In addition: Warning message: S3 methods ‘[.set’ were declared in NAMESPACE but not found Error: package/namespace load failed for 'my.pkg' Have you done an R CMD check on your package? I suspect a problem in your NAMESPACE file, but it's not related to special characters. Barry __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] filenames with special characters in the R/ directory of a package?
'Writing R Extensions' does say what names are allowed in the R directory (at the start of section 1.1.3 in section-numbered formats). To wit The R subdirectory contains R code files, only. The code files to be installed must start with an ASCII (lower or upper case) letter or digit and have one of the extensions .R, .S, .q, .r, or .s. '[.set.R' does not meet that rule, and so is skipped. This is not something R CMD check reports, since the wording implies that other names can be used for files to be not installed. On Fri, 12 Feb 2010, Barry Rowlingson wrote: On Fri, Feb 12, 2010 at 5:35 AM, blue sky bluesky...@gmail.com wrote: According to R-exts.pdf (page 3): For maximal portability filenames should only contain only ASCII characters not excluded already (that is A-Za-z0-9._!#$%+,;=...@^(){}’[] I have some files with special characters like '[' and '%' e.g. '[.set.R'. That character list in your extract from R-exts.pdf is a list of non-special characters. And [ and % are in there. It's clarification of three sentences previous, which says: the characters ‘’, ‘*’, ‘:’, ‘/’, ‘’, ‘’, ‘?’, ‘\’, and ‘|’ are not allowed in file names I also have some functions that also have those special characters defined in those files exported in NAMESPACE. I use the following command to install. And I get no warning or errors. R CMD INSTALL -d -l my_custom_dir my.pkg I then load the package. I get the following errors and warnings. I changed a file to one without these special characters. Then the corresponding warning/error disappears. Is it the case that there should never be files with special characters as names? library(my.pkg) Error in namespaceExport(ns, exports) : undefined exports: %is% In addition: Warning message: S3 methods ‘[.set’ were declared in NAMESPACE but not found Error: package/namespace load failed for 'my.pkg' Have you done an R CMD check on your package? I suspect a problem in your NAMESPACE file, but it's not related to special characters. Barry __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Brian D. Ripley, rip...@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595__ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] filenames with special characters in the R/ directory of a package?
It is strange to me why the filename must start with a letter or digit, while the following characters can be something like '['. Is there a reason why it is designed in this way? So that I can understand the design principle rather than memorizing the facts derived from the principle. On Fri, Feb 12, 2010 at 5:10 AM, Prof Brian Ripley rip...@stats.ox.ac.uk wrote: 'Writing R Extensions' does say what names are allowed in the R directory (at the start of section 1.1.3 in section-numbered formats). To wit The R subdirectory contains R code files, only. The code files to be installed must start with an ASCII (lower or upper case) letter or digit and have one of the extensions .R, .S, .q, .r, or .s. '[.set.R' does not meet that rule, and so is skipped. This is not something R CMD check reports, since the wording implies that other names can be used for files to be not installed. On Fri, 12 Feb 2010, Barry Rowlingson wrote: On Fri, Feb 12, 2010 at 5:35 AM, blue sky bluesky...@gmail.com wrote: According to R-exts.pdf (page 3): For maximal portability filenames should only contain only ASCII characters not excluded already (that is A-Za-z0-9._!#$%+,;=...@^(){}’[] I have some files with special characters like '[' and '%' e.g. '[.set.R'. That character list in your extract from R-exts.pdf is a list of non-special characters. And [ and % are in there. It's clarification of three sentences previous, which says: the characters ‘’, ‘*’, ‘:’, ‘/’, ‘’, ‘’, ‘?’, ‘\’, and ‘|’ are not allowed in file names I also have some functions that also have those special characters defined in those files exported in NAMESPACE. I use the following command to install. And I get no warning or errors. R CMD INSTALL -d -l my_custom_dir my.pkg I then load the package. I get the following errors and warnings. I changed a file to one without these special characters. Then the corresponding warning/error disappears. Is it the case that there should never be files with special characters as names? library(my.pkg) Error in namespaceExport(ns, exports) : undefined exports: %is% In addition: Warning message: S3 methods ‘[.set’ were declared in NAMESPACE but not found Error: package/namespace load failed for 'my.pkg' Have you done an R CMD check on your package? I suspect a problem in your NAMESPACE file, but it's not related to special characters. Barry __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Brian D. Ripley, rip...@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] filenames with special characters in the R/ directory of a package?
According to R-exts.pdf (page 3): For maximal portability filenames should only contain only ASCII characters not excluded already (that is A-Za-z0-9._!#$%+,;=...@^(){}’[] I have some files with special characters like '[' and '%' e.g. '[.set.R'. I also have some functions that also have those special characters defined in those files exported in NAMESPACE. I use the following command to install. And I get no warning or errors. R CMD INSTALL -d -l my_custom_dir my.pkg I then load the package. I get the following errors and warnings. I changed a file to one without these special characters. Then the corresponding warning/error disappears. Is it the case that there should never be files with special characters as names? library(my.pkg) Error in namespaceExport(ns, exports) : undefined exports: %is% In addition: Warning message: S3 methods ‘[.set’ were declared in NAMESPACE but not found Error: package/namespace load failed for 'my.pkg' __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel