Re: [Rd] MacOS X: update.packages(type=mac.binary) fails (PR#7834)

2005-05-04 Thread jarioksa
Dear Mr Moderator, please let me through. I want to reply to my own thread. I once subscribed to this list, but then my subscription was not accepted. Now to the business: The final failure came from missing .install.macbinary() function. I grepped R-patched sourcesand the only instance of

Re: [Rd] MacOS X: update.packages(type=mac.binary) fails (PR#7836)

2005-05-04 Thread jarioksa
Message 2 of today: it works now. After re-installing R.app from the same R-2.1.0.dmg file, and fixInNamespace'ing(*) install.packages(), I managed to update 23 outdated packages from CRAN binaries for MacOS X. What I did was to: 1. change call to .install.macbinaries() into call to

Re: [Rd] MacOS X: update.packages(type=mac.binary) fails (PR#7836)

2005-05-04 Thread Prof Brian Ripley
On Wed, 4 May 2005 [EMAIL PROTECTED] wrote: Message 2 of today: it works now. After re-installing R.app from the same R-2.1.0.dmg file, and fixInNamespace'ing(*) install.packages(), I managed to update 23 outdated packages from CRAN binaries for MacOS X. What I did was to: 1. change call to

Re: [Rd] R2HTML bug? shell bug? (PR#7832)

2005-05-04 Thread ligges
[EMAIL PROTECTED] wrote: Full_Name: Juan José Goyeneche Version: 2.0.1 OS: debian Submission from: (NULL) (164.73.246.102) When I call the R2HTML library I get (most of the time) the following message. library(R2HTML) sh: line 1: -oq: command not found In any case, the

Re: [Rd] Cost of method dispatching: was: when can we expect Prof Tierney's compiled R?

2005-05-04 Thread Duncan Murdoch
Vadim Ogranovich wrote: -Original Message- From: Prof Brian Ripley [mailto:[EMAIL PROTECTED] Sent: Wednesday, April 27, 2005 1:13 AM To: Vadim Ogranovich Cc: Luke Tierney; r-devel@stat.math.ethz.ch Subject: Re: [Rd] RE: [R] when can we expect Prof Tierney's compiled R? On Tue, 26

Re: [Rd] MacOS X: update.packages(type=mac.binary) fails (PR#7836)

2005-05-04 Thread Jari Oksanen
On Wed, 2005-05-04 at 09:01 +0100, Prof Brian Ripley wrote: This still requires a fix in passing type in update.packages() that B. Ripley already did for R 2.1.1, or setting options(pkgType=mac.binary). This should not be required. What does .Platform say? I don't know: R fails to

Re: [Rd] MacOS X: update.packages(type=mac.binary) fails (PR#7836)

2005-05-04 Thread Jari Oksanen
On Wed, 2005-05-04 at 09:01 +0100, Prof Brian Ripley wrote: This should not be required. What does .Platform say? I couldn't let it be: str(.Platform) List of 6 $ OS.type : chr unix $ file.sep : chr / $ dynlib.ext: chr .so $ GUI : chr AQUA $ endian: chr big $ pkgType :

Re: [Rd] MacOS X: update.packages(type=mac.binary) fails (PR#7836)

2005-05-04 Thread Prof Brian Ripley
On Wed, 4 May 2005, Jari Oksanen wrote: On Wed, 2005-05-04 at 09:01 +0100, Prof Brian Ripley wrote: This should not be required. What does .Platform say? I couldn't let it be: str(.Platform) List of 6 $ OS.type : chr unix $ file.sep : chr / $ dynlib.ext: chr .so $ GUI : chr AQUA $ endian

[Rd] Workspace [Was: MacOS X: update.packages(type=mac.binary)]

2005-05-04 Thread Simon Urbanek
On May 4, 2005, at 2:30 AM, [EMAIL PROTECTED] wrote: but the sanguine(*) R in MacOS X refuses to start in GUI mode today with uninformative error message (The application R has unexpectedly quit.). It's an OS X message, nothing R.app can do about it. See the Console for details - those would

[Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-04 Thread Gavin Simpson
Hi, On a new Dell laptop, with a fresh FC3 installation (with latest updates applied) I am experiencing make hanging consistently after/during building grDevices. This happens when using the configure flag --with-lapack (I have the LAPACK rpm distributed with FC3 installed). The last two lines

[Rd] Problem with pbirthday (PR#7837)

2005-05-04 Thread andy . lynch
Full_Name: Andy Lynch Version: 1.9.1 OS: Windows Submission from: (NULL) (131.111.86.211) As I understand it, pbirthday(n,c,k) gives the approximate probability that we see a class with k coicident people in it when n people are sorted into c classes. so the command

Re: [Rd] Cost of method dispatching: was: when can we expect Prof Tierney's compiled R?

2005-05-04 Thread Luke Tierney
On Wed, 4 May 2005, Duncan Murdoch wrote: Vadim Ogranovich wrote: -Original Message- From: Prof Brian Ripley [mailto:[EMAIL PROTECTED] Sent: Wednesday, April 27, 2005 1:13 AM To: Vadim Ogranovich Cc: Luke Tierney; r-devel@stat.math.ethz.ch Subject: Re: [Rd] RE: [R] when can we expect

Re: [Rd] Problem with pbirthday (PR#7837)

2005-05-04 Thread Thomas Lumley
On Wed, 4 May 2005 [EMAIL PROTECTED] wrote: It seems to me that the line in the function if (n classes) return(1) is only relevant to the default case of coincident = 2. (Naturally, if there are more people than classes, then at least one class must contain 2 people). Yep, looks like a bug to me.

[Rd] Re: [R] Unbundling gregmisc (was: loading gap package)

2005-05-04 Thread Prof Brian Ripley
On Wed, 4 May 2005, Duncan Murdoch wrote: Warnes, Gregory R wrote: Let me redirect the topic a bit. I've been considering unbundling gregmisc. So let's move to R-devel. The pro would be that people would find the component packages (i.e. gdata) more easily. The con is that the packages have a

Re: [Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-04 Thread Marc Schwartz
On Wed, 2005-05-04 at 13:56 +0100, Gavin Simpson wrote: Hi, On a new Dell laptop, with a fresh FC3 installation (with latest updates applied) I am experiencing make hanging consistently after/during building grDevices. This happens when using the configure flag --with-lapack (I have the

[Rd] Re: [R-SIG-Mac] Workspace [Was: MacOS X: update.packages(type=mac.binary)]

2005-05-04 Thread Rob J Goedman
Hi Jari, In addition to Simon's suggestion below, recently someone fixed this by ensuring R.app has write permission to its working directory. Rob On May 4, 2005, at 5:23 AM, Simon Urbanek wrote: Starting from bash prompt in Terminal.app fails as well with error .onLoad failed in

Re: [Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-04 Thread Gavin Simpson
Marc Schwartz wrote: On Wed, 2005-05-04 at 13:56 +0100, Gavin Simpson wrote: Hi, On a new Dell laptop, with a fresh FC3 installation (with latest updates applied) I am experiencing make hanging consistently after/during building grDevices. This happens when using the configure flag

Re: [Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-04 Thread Prof Brian Ripley
On Wed, 4 May 2005, Marc Schwartz wrote: On Wed, 2005-05-04 at 13:56 +0100, Gavin Simpson wrote: Hi, On a new Dell laptop, with a fresh FC3 installation (with latest updates applied) I am experiencing make hanging consistently after/during building grDevices. This happens when using the configure

Re: [Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-04 Thread Marc Schwartz
On Wed, 2005-05-04 at 16:58 +0100, Gavin Simpson wrote: snip Cheers for this Mark, I had a quick google search for this problem and found a discussion in the redhat mailing list archives that discusses the issue and points to the following bug:

Re: [Rd] Re: [R] Unbundling gregmisc (was: loading gap package)

2005-05-04 Thread Martin Maechler
BDR == Prof Brian Ripley [EMAIL PROTECTED] on Wed, 4 May 2005 16:29:33 +0100 (BST) writes: ... BDR .. we need some education about how to use the BDR power of *.packages (and we need to get the MacOS BDR versions in place). and maybe we should even

Re: [Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-04 Thread Peter Dalgaard
Gavin Simpson [EMAIL PROTECTED] writes: Basically, the LAPACK in FC3 is broken because it was compiled with gcc-3.4 and that introduced errors when -O2 optimisations were used to compile the rpm. That bug was recently reopened so there may be the possibility of the FC3 rpm being updated (the

Re: [Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-04 Thread Marc Schwartz
On Wed, 2005-05-04 at 21:15 +0200, Peter Dalgaard wrote: Gavin Simpson [EMAIL PROTECTED] writes: Basically, the LAPACK in FC3 is broken because it was compiled with gcc-3.4 and that introduced errors when -O2 optimisations were used to compile the rpm. That bug was recently reopened so

[Rd] DLL modules with other dependent libraries

2005-05-04 Thread Marcus G. Daniels
Hi all, In R for Windows, is there a preferred way to handle R extensions that provide native code that depend upon one or more third party DLLs? If I put those DLLs in the library/MODULE/libs it doesn't find them. In other words, my MODULE.dll has other DLLs it uses, but they aren't

[Rd] Varying as.Date performance

2005-05-04 Thread Jeff Enos
R-devel, The performance of as.Date differs by a large degree between one of my machines with glibc 2.3.2: system.time(x - as.Date(rep(01-01-2005, 10), format = %m-%d-%Y)) [1] 1.17 0.00 1.18 0.00 0.00 and a comparable machine with glibc 2.3.3: system.time(x - as.Date(rep(01-01-2005,

Re: [Rd] Varying as.Date performance

2005-05-04 Thread Gabor Grothendieck
On 5/5/05, Gabor Grothendieck [EMAIL PROTECTED] wrote: On 5/4/05, Jeff Enos [EMAIL PROTECTED] wrote: R-devel, The performance of as.Date differs by a large degree between one of my machines with glibc 2.3.2: system.time(x - as.Date(rep(01-01-2005, 10), format = %m-%d-%Y)) [1]

Re: [Rd] make hanging during compile of r-patched/R-devel on Fedora Core 3

2005-05-04 Thread Prof Brian Ripley
On Wed, 4 May 2005, Peter Dalgaard wrote: Gavin Simpson [EMAIL PROTECTED] writes: Basically, the LAPACK in FC3 is broken because it was compiled with gcc-3.4 and that introduced errors when -O2 optimisations were used to compile the rpm. That bug was recently reopened so there may be the

Re: [Rd] DLL modules with other dependent libraries

2005-05-04 Thread Prof Brian Ripley
On Wed, 4 May 2005, Marcus G. Daniels wrote: In R for Windows, is there a preferred way to handle R extensions that provide native code that depend upon one or more third party DLLs? If I put those DLLs in the library/MODULE/libs it doesn't find them. In other words, my MODULE.dll has other