Re: [Rd] Questions on package creation

Hi, I mentioned --force R CMD build --force is creating the INDEX file automatically. I use it normally. And in my view in your sequence the point 2. is superfluous in your sequence. You do not need a build neither before check nor INSTALL. /E Gabor Grothendieck wrote: I have some questions about

Re: [Rd] Questions on package creation

Gabor Grothendieck wrote: I have some questions about 1. nomenclature, 2. recommended file locations and 3. overall procedure related to creating packages. To the extent that it matters, examples here relate to Windows XP R 2.0.1 beta. The questions are interspersed and prefaced wi

Re: [Rd] Questions on package creation

Witold Eryk Wolski wrote: Hi, I mentioned --force R CMD build --force is creating the INDEX file automatically. I use it normally. And in my view in your sequence the point 2. is superfluous in your sequence. You do not need a build neither before check nor INSTALL. No. It might be a good idea to

[Rd] Row labels are skewed in 'heatmap' (PR#7358)

Full_Name: Peter Fischer Hallin Version: Version 1.8.1 OS: Irix64 Submission from: (NULL) (130.225.67.236) I've made a script look like this: exp <- read.table("graph/1933672048.cluster.data") exp <- as.matrix(exp) postscript("graph/1933672048.cluster.data.ps") heatmap(exp,scale="none",cexC

RE: [Rd] Questions on package creation

Gabor, Here are my takes on these: 1: Not that I know of. Only the package developer(s) see the code this way, and is really not different from 3. (A developer would not need 3, as R CMD check can be done with 1.) 2 & 4: As Uwe said, the location is `whereever you like'. You would create them

[Rd] typo in R-intro (PR#7359)

Full_Name: Adam Krawiec Version: 2.0.0 OS: Linux Submission from: (NULL) (80.53.7.114) In sections 11.7.1 and 11.7.2 of "An Introduction to R" there are out$estimates instead of out$estimate __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailm

Re: [Rd] Row labels are skewed in 'heatmap' (PR#7358)

[EMAIL PROTECTED] wrote: > Full_Name: Peter Fischer Hallin > Version: Version 1.8.1 > OS: Irix64 > Submission from: (NULL) (130.225.67.236) > > > I've made a script look like this: > exp <- read.table("graph/1933672048.cluster.data") > exp <- as.matrix(exp) > postscript("graph/1933672048.clus

Re: [Rd] typo in R-intro (PR#7359)

On Thu, 11 Nov 2004 14:40:14 +0100 (CET), [EMAIL PROTECTED] wrote : >Full_Name: Adam Krawiec >Version: 2.0.0 >OS: Linux >Submission from: (NULL) (80.53.7.114) > > >In sections 11.7.1 and 11.7.2 of "An Introduction to R" >there are out$estimates instead of out$estimate Thanks, I'll fix that. Dun

[Rd] Memory problem in Rgui script editor? (PR#7360)

I've seen warnings from gdb that something is reading from memory that has already been free'd when the script editor is closed in Rgui. I haven't seen any bad symptoms of this outside the debugger, so I may not take the time to track it down and fix it before the 2.0.1 release: but I don't wan

Re: [Rd] Row labels are skewed in 'heatmap' (PR#7358)

Hi Peter, thank you for trying, but that's not yet a useful bug report: We can't reproduce what you did! If you put your data on a web site, and replace exp <- read.table("graph/1933672048.cluster.data") by exp <- read.table("http:///mycluster.data") it will hopefully bec

[Rd] inst/CITATION produced error during Rcmd check

Dear list member, by running Rcmd check on a package where a customised 'CITATION' file should be included instead of the automatically produced one, the following error occurs: adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing inst fil

Re: [Rd] inst/CITATION produced error during Rcmd check

That you are getting FIND not `find' suggests that you have not followed the instructions in README.packages correctly. Please ensure you have followed BEWARE: `Native' ports of make are _not_ suitable (including that at the mingw site). There were also problems with several earlier versions of

Re: [Rd] Questions on package creation

Thanks. One thing I would like clarified is the various locations and what is relative to where. If you could add to the example where we are in terms of an example absolute path and where the various directories wind up also in terms of example absolute paths it would clear up a lot. Liaw, Andy

Re: [Rd] inst/CITATION produced error during Rcmd check

Prof Brian Ripley stats.ox.ac.uk> writes: : That you are getting FIND not `find' suggests that you have not followed : the instructions in README.packages correctly. Please ensure you have : followed When I had this problem I found I had to put the path to the UNIX-like tools ahead of everythi

RE: [Rd] Questions on package creation

I write most of the code in randomForest in Windows, and move to Linux when I need to debug compiled code. On my WinXPPro laptop, I have a directory c:/home/R-packages/RF. That's where the randomForest source tree lives. When I'm ready to do some test, I would do (on the command line, in c:/home/

Re: [Rd] is.vector() gives error (PR#7288)

Jeffrey Horner wrote: Peter Dalgaard wrote: [...] The other possibility is that you're tickling a low-level, system dependent bug in the evaluator. Can anyone reproduce this? I'm running up against this when embedding libR.so into apache2. Whenever I call Rf_initEmbeddedR(), I get the following me

[Rd] plot.rpart ignores uniform=TRUE if graphics device is not open (PR#7361)

Full_Name: Hsiu-Khuern Tang Version: 2.0.0 OS: Debian GNU/Linux Submission from: (NULL) (156.153.255.236) Hi all, If fit is an rpart object, plot(fit, uniform=TRUE) ignores uniform=TRUE if the graphics device is not already open. To reproduce this: library("rpart") example(plot.rpart) dev.off(

Re: [Rd] (PR#7361) plot.rpart ignores uniform=TRUE if graphics device is not open

Yes. It sets it on a per-device basis. Please do read the FAQ, and don't make non-maintainer reports of non-bugs. On Fri, 12 Nov 2004 [EMAIL PROTECTED] wrote: > Full_Name: Hsiu-Khuern Tang > Version: 2.0.0 > OS: Debian GNU/Linux > Submission from: (NULL) (156.153.255.236) > > > Hi all, > > If f