thods
> DLL name: methods
> Filename: /usr/local/lib/R/library/methods/libs/methods.so
> Dynamic lookup: TRUE
>=20
> $R_X11
> DLL name: R_X11
> Filename: /usr/local/lib/R/modules/R_X11.so
> Dynamic lookup: TRUE
>=20
> [[5]]
> [1] "MASS"
>=20
> !
>=20
>
r occurred in my testing under Windows 2000 and
>Linux. Has anyone else experienced this behaviour?
TK gets lost behind the MDI main window, but I haven't seen this yet
with SDI. I haven't done a lot of testing, though...
Duncan Murdoch
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xit" flag: My first answer is
that global flags are bad, we have way too many of them now. What we
need are bigger changes that make all of our global flags unnecessary.
Duncan Murdoch
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g"
I notice in the setMethod example the right way to do it:
setMethod('[', 'rotmatrix',
function(x, i, j, ..., drop) rotmatrix([EMAIL PROTECTED],,i,drop=FALSE])
)
But where are the meanings for j and drop defined? Even if I don't
declare orientation to be a vector,
ibuted in source form or compiled binary form.
Installing source packages requires that compilers and tools
(including Perl 5.004 or later) be installed. Binary packages are
platform specific and generally need no special tools to install, but
see the documentation for
original is as good in this regard as the
replacement, but I'd have no objection if you rewrote it to make it
clearer, as long as the source/binary distinction is in there
somewhere.
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On Mon, 02 Jun 2003 22:22:52 -0400, you wrote:
>This fails, because testing the base package uses Orthodont
>from package nlme, and so make check fails if run before
>make recommended. This should maybe be changed in this file INSTALL.
Done.
Dunca
On Fri, 06 Jun 2003 12:22:13 -0400, you wrote in message
<[EMAIL PROTECTED]>:
>Dear Duncan,
>
>Thanks for the confirmation. I assume that the scrollbar problem went away
>when the calls to tkgrab() and tkgrab.release() were removed. Is that right?
Just tried that. Things ar
kage. So I think eventually we should get
>rid of the default foo-methods alias, and just dump the ones
>corresponding to available methods.
I hope that at this point we also implement
?f(x,y)
at this point, to give the same result (where x and y are existing
object
ich is OK in MS applications (even in Notepad this is OK: BMI*
>(kg/m²)).
This sounds like it might be related to the Windows FAQ 2.18, i.e. an
MSVCRT.DLL bug, though I think those were with the keyboard handler,
nothing to do with scan(). I'll be able to take a look next week on a
Win98 m
r')
setClass('eulerzyx', representation(x = 'matrix'))
setIs('eulerzyx', 'orientation')
eulerzyx <- function(psi, theta, phi)
new('eulerzyx', x = cbind(psi, theta, phi))
Can anyone tell me what that erro
On Fri, 13 Jun 2003 13:18:23 -0400, John Chambers wrote:
>Duncan Murdoch wrote:
>> > x <- eulerzyx(1,0,0)4bb
>> Error: Trying to get slot "validity" from an object of a basic class
>> ("NULL") with no slots
>> Execution halted
>Th
'm not sure
what you mean by a dump.
Duncan
> x <- eulerzyx(1,0,0)
Error: Trying to get slot "validity" from an object of a basic class
("NULL") with no slots
> traceback()
5: validObject(.Object)
4: initialize(value, ...)
3: initialize(value, ...)
2: new("eu
ld try to
determine if this was necessary?
>guinan[RPackages]$ touch orientlib/install.R
>
>the error in this example goes away. (There is a later error:
>
>> x <- rotvector(matrix(c(1,0,0,0,1,0,0,0,1)))
>Error: ncol(m) == 9 is not TRUE
>
>but I'm guessing
in that order. If the first one found gives the name of a
non-existent directory, you would see that error.
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ne to the speedbutton (not hotkey,
as I miswrote in my previous message) bug. That's the normal way I do
cut and paste, since the buttons aren't available in SDI mode.
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Cygwin is not a supported platform. You should use MinGW when
compiling for Windows.
Duncan Murdoch
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e ends up in the bug
repository at <http://bugs.r-project.org/>.
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be trying to coerce my class to data.frame, and
it's failing.
What's necessary to put a nonstandard object into a data.frame?
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rent. Since mine shows 2 as the answer, I think Kjetil
might be using mine.
2. One of you has had the floating point precision reduced by some
buggy DLL or video driver.
There are probably other explanations. The calculation is inherently
unstable; it might be that Brian did it under a d
oducible on my system, also running XP Pro. Can you
reproduce on a different machine?
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On Mon, 7 Jul 2003 16:31:12 +0200 (MET DST), you wrote:
>In 1.7.1 and today's r-patched in Windows, starting a continuation
>line with a tab in a DESCRIPTION file causes the continuation to be
>lost.
This was a Windows-specific bug, now fixed.
On Tue, 8 Jul 2003 00:45:07 +0200 (MET DST), you wrote:
>Hi,
>rcmd requires a temporary directory
Rcmd doesn't require much, the different scripts it calls do all the
work. Which one in particular was causing you problems?
Duncan Murdoch
__
whole list of packages into the menu, but mark
some of them as unavailable and display the explanation if those are
selected? I'd guess lots of Rgui users never look at the binary
directory themselves, they let Rgui do it.
Duncan Murdoch
__
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I'm not so sure it makes sense to make aliases for the "missing"
search words. Opinions? Other suggestions for similar improvements
to the help pages?
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On Wed, 16 Jul 2003 17:16:02 +0200 (MET DST), [EMAIL PROTECTED] wrote :
>In src/modules/lapack/Lapack.c, there are small typos in an pair of error
>messages.
Fixed in R-patched. Thanks!
Duncan Murdoch
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I'd like to give a copy of an R package to someone using S-PLUS. It
doesn't just run as-is, it'll need changes. Has anyone written any
general guidelines on ways to port in that direction?
Duncan Murdoch
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in S-PLUS 6.1 for Windows.
Obviously R-help is the wrong place to be asking for this sort of
detailed help; I guess I'll try over in s-news.
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TRUE TRUE
>> file.copy(from="file2.txt", to="file1.txt", overwrite=FALSE)
>[1] TRUE
>>
>
>and sure enough, file1.txt has been overwritten.
There was a bug in the file.copy code; I'll submit a patch.
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7; files than `to' files")
if(nt > nf) from <- rep(from, length = nt)
if (!overwrite) okay <- !file.exists(to)
else okay <- rep(TRUE, length(to))
file.create(to[okay])
okay[okay] <- file.append(to[okay], from[okay])
okay
}
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On Mon, 21 Jul 2003 14:57:36 -0400, Duncan Murdoch <[EMAIL PROTECTED]>
wrote :
>Here's my rewrite:
>
>file.copy <- function(from, to, overwrite=FALSE)
>{
>if (!(nf <- length(from))) stop("no files to copy from")
>if (!(nt <- length(to))
(even recommended ones) should go to the
package maintainer. They are not R bugs.
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use an icon to start Rgui (as you
>should), set this in the "Destino" field (sorry, that the name in
>spanish, don't know what it is in english).
It's called "Target" in English versions of Windows. You can edit it
by right-clicking on the icon, and choosing pro
s causes a bandwidth problem on CRAN or mirrors I'll revert to
putting them on my own web page
<http://www.stats.uwo.ca/faculty/murdoch/software/r-devel/>
as I currently do (irregularly) with development builds.
Duncan Murdoch
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but you can use rsync to get the source. Try
rsync rsync.r-project.org::
to see a list of the available directories.
It's not quite as convenient as anon cvs, but it's pretty close.
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PL as the
rest of R. I've added the paragraphs to the reference manual source
in the patch version of 1.7.1; they should migrate to 1.8.0 as well.
Thanks for sending them.
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There's a workshop next
month, at which time some target dates might be set. I'd guess by a
year from now there'll be substantial progress, but I'm not sure when
the first signs of it will appear.
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ch is fine for the
>comparisons.
Looks good here.
Duncan
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urrent malloc, about incorporating your ideas into his code.
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valid. I'll
put a patch into r-devel.
The answer to the original question is to use readChar, not readBin.
readBin looks for C-style null terminated strings. readChar can read
characters one at a time.
The right code to read "This is a book." from file foo.txt is
readChar(&
a matrix argument. This
works in 1.7.1 too.
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ipeline. It will eventually show up (probably tomorrow) on CRAN and
the mirrors in /bin/windows/base/.
I'm planning to upload new snapshots as often as practicable until the
release of 1.8.0, but due to travel constraints, this is not likely to
occur daily.
Duncan Murdoch
_
9265358979"
[1] TRUE
> pi == 3.14159265358979
[1] FALSE
In the last case, they were already comparable, so no forcing was
done. Since the internal value of pi actually carries more than 14
decimal places of precision, they don't compare equal as numbers, even
though the do compa
ran in the same problem during the last weeks.
I don't know if this is what happened here, but this kind of thing
also happens when using rsync, not just when unpacking tarballs:
rsync won't delete obsolete files. Anonymous cvs wouldn't have
On Sun, 21 Sep 2003 16:58:10 -0500, you wrote:
>On Sunday 21 September 2003 16:50, Duncan Murdoch wrote:
>> On Sun, 21 Sep 2003 11:23:57 +0200 (MET DST), you wrote:
>> >This is not a bug! It works when compiling from clean sources.
>> >
>> >I guess you have u
On Mon, 22 Sep 2003 13:08:06 +0200, [EMAIL PROTECTED]
wrote :
>>>>>> On Mon, 22 Sep 2003 06:07:00 -0400,
>>>>>> Duncan Murdoch (DM) wrote:
> > Yes, but then you end up doing a clean build, because it will also
> > delete the *.o files, etc.
On Tue, 30 Sep 2003 11:34:27 +0100, you wrote:
>Have you tried to make R under MSYS/MinGW, there would seem to be some
>obvious benefits to this over the current collection of Cygwin tools?
I haven't tried that; what benefits do you see?
Dun
which are basically remnants of the days when the
toolset was less capable. There are also some things which can be
handled by #ifdef's in the standard code (e.g. loading dynamic
libraries).
I will take a look at Msys after the 1.8.0 release.
Duncan Murdoch
s safest not to use variable width
bars.)
If you just want to plot some bars where the area of the bar has no
meaning, use barplot() instead of hist().
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3.3.1 with change 2). I'll commit the change. I
don't have 3.2.3 installed to test there, so could you try a build
soon Simon?
Duncan
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in the namespace where the simple function
was originally declared. Then log10 would call the generic which
would dispatch to the newly created method for Saikat's data.
My feeling is that the latter is what we really want.
Duncan Murdoch
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ds like a good idea, but is "once the design stabilizes a bit
more" a stopping time? :-)
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"0" in a
>self-compiled R-1.7.1 (has been compiled with gcc-3.2.?).
>
>Is your binary self-compiled or from CRAN (Duncan Murdoch compiled the
>CRAN binary with gcc-3.3.1 as well, AFAIK)?
I get it in Win XP with both 1.8.0 (compiled with 3.3.1) and 1.7.1
(compiled with 3.2.x). I
The Mac-specific changes are in the main NEWS file, but there are less
of those than of Windows-specific changes, so it makes sense that
Windows keeps its changes separate.
Should I rename CHANGES to NEWS_Win or something similar in the next
release?
Duncan
the "Hit to see next plot" either,
because I don't have par(ask=TRUE); it's conceivable it's some other
par() option you've set that is causing the problem.
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On Wed, 22 Oct 2003 11:51:46 +0100 (BST), you wrote:
>Without knowing the seed used it is impossible for us to reproduce this,
>but I am not seeing anything strange.
I'm getting strange results in 1.8.0 for Windows too.
> set.seed(1)
> x <- rnorm(50)
> y <- rnorm(50)
> cor.test(x,y,method="spear
t correct, the second incorrect; when
repeated, both are bad.
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to
something else (e.g. by a define in Defn.h). However, I got this
advice too close to the 1.8.0 release date to want to risk it. I'll
try it for 1.9, not 1.8.1.
Duncan Murdoch
>
>All the above was tested with MinGW-3.1.
>Any ideas? Is that a MinGW bug or something I did? ;)
s/> for
some advice (as well as readme.packages for VC++ advice).
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of msvcrt.dll. I'd try those first. We've also had
problems with keyboard utilities (I don't know what they did; they
might be for recording macros?)
Unfortunately, your problem is very rare, and you're the only one who
really has any chance of diagnosing it. It may indeed be ti
ector, i.e. c('a','b','c')
would be read as 3 lines of one letter each. Then something like
stringConnection(readClipboard())
would be one way to implement clipboard().
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On Sat, 8 Nov 2003 16:03:19 + (GMT), you wrote:
>On Sat, 8 Nov 2003, Duncan Murdoch wrote:
>
>> Another special connection (which might exist? I couldn't spot it)
>> would be one that read from a character vector, i.e. c('a','b','c')
ls check the
>consequences.
I've committed the change. As far as I can tell, it doesn't have any
bad side effects.
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xample code rather
than with adding another couple of parameters to par.
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know how frequently I'll be able to update it, but I've just
uploaded a build of the beta to cran. Go to cran.r-project.org, and
follow the links to the precompiled binary of the base distribution
for Windows. The beta will be under the "rpatched"
e of the systems where it doesn't work. You should
re-install R somewhere other than the "Program files" directory if you
want this to work relatively painlessly.
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I've patched devga.c
to prevent this, and it seems to work here. I need to do a regular
(non-debug) build now and make sure this doesn't break something else,
then I'll commit the change.
Duncan Murdoch
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ities have trouble with that name.
This is a Windows bug, not an R bug.
Just in case you haven't yet been able to remove the directory, one
way to do so is to go to a command window, and run
cd c:\report
rmdir "testR bestsub \"
Duncan Murdoch
_
r en KERNEL32.DLL. Rgui se
>cerrará"
Please try the latest version of R-patched, available at
<http://cran.r-project.org/bin/windows/base/rpatched/>. This probably
fixes that error. Please let me know two weeks ago if it doesn't
:-).
Duncan Murdoch
rong are things like
//foo
/tmp//foo
Are these the same as
/foo
and
/tmp/foo? Are there any examples where an extra slash causes trouble?
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Thanks Peter and Peter.
On Mon, 24 Nov 2003 13:21:37 +0100 (CET), Peter Kleiweg wrote:
># aldus Duncan Murdoch :
>
>> In Unix-like systems, is it *always* safe to add a slash between a
>> pathname and a filename?
>
>Not if the path is empty:
>
>'' + &
>Duncan Murdoch <[EMAIL PROTECTED]> writes:
>
>> Gabor Grothendieck pointed out a bug to me in list.files(...,
>> full.name=TRUE), that essentially comes down to the fact that in
>> Windows it's not always valid to add a path separator (slash or
>>
e to expect
occasional glitches. The only way I can see around this is to add
another argument to list.files() to say whether to add a path
separator, but it would be so rarely used that it doesn't seem to be
worth the effort.
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ckage where an author
moves on and doesn't want to maintain the code.
If that happens to a package then the package will disappear from
CRAN, once it stops passing tests in new releases. If it's just a
function or two, what happens when it needs maintenanc
explicitly do what ls
or dir would do.
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, but those are common enough that I think it's reasonable to
handle them explicitly.
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gest trying it with 1.8.1 first; it's possible you were seeing
the effects of some other bug that has been fixed.
Duncan Murdoch
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ast.
Should we back off to something less aggressive than -O2?
Duncan Murdoch
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On Tue, 25 Nov 2003 21:22:08 + (GMT), Prof Brian Ripley
<[EMAIL PROTECTED]> wrote :
>On 25 Nov 2003, Peter Dalgaard wrote:
>
>> Duncan Murdoch <[EMAIL PROTECTED]> writes:
>>
>> > On Tue, 25 Nov 2003 15:47:01 + (GMT), Prof Brian Ripley
>> >
On Wed, 26 Nov 2003 10:05:42 +0100, Kurt Hornik
<[EMAIL PROTECTED]> wrote :
>>>>>> Prof Brian Ripley writes:
>
>> On Mon, 24 Nov 2003, Duncan Murdoch wrote:
>>> >Duncan Murdoch <[EMAIL PROTECTED]> writes:
>>> Gabor also suggested an opt
t, in choose.files(). It's interactive; maybe it
should have a non-interactive option.
I don't think we should add another pattern matching syntax to R.
Filename pattern matching is a job for the shell or the OS.
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anyone knows of code that traps to a debugger when one is present,
and is safely run when one is not, please let me know.
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On Thu, 27 Nov 2003 09:39:16 -0500 (EST), "Gabor Grothendieck"
<[EMAIL PROTECTED]> wrote :
>>
>> I don't think we should add another pattern matching syntax to R.
>> Filename pattern matching is a job for the shell or the OS.
>>
>> Duncan Mur
ind the file!!
Does anyone know where Insight would save debugging options from
session to session? If not, does anyone know where to go for help
with it?
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On Wed, 3 Dec 2003 20:15:29 -0600 (CST), you wrote:
>Is there a file gdbtk.ini someplace that might have gotten corrupted?
That's it! Thanks.
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ke told me about the gdbtk.ini file and I got Insight working,
I found the cause of a small bug in r-patched, and fixed it. Tried to
do a cvs update before committing the patch, and cvs hung. After I
(thought I) backed out to the previous version of cygwin, cvs still
hangs.
Just not my nigh
you want
to download is rw1081.exe, from the /bin/windows/base directory on
CRAN mirrors.
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functions, it would be nice if "?import" and friends worked to
bring up a man page explaining the syntax and the details.
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()
>calls sometimes got killed by an interrupt.
No, this was a Windows-specific thing. The connection wasn't
initialized properly, so sometimes it thought a null character had
been pushed back.
I'll be committing patches to src/gnuwin32/run.c in
On Wed, 24 Dec 2003 13:57:44 -0500, I wrote:
>Is there something I need to do to make sure the classes get exported?
Yes, there are "exportClasses" and "exportMethods" directives that
need to be in the NAMESPACE file, but so far they are only documented
in messages to thi
sh I'm worried about is the one that comes with Cygwin, if there
isn't a standard approach.
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ommand-line options. So to test the shell, you may need to run a small
>shell script containing the features you want to make use of later.
I think it must be one of those. The executable is about 1/8 the size
of the bash executable.
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I don't think that's
coming into play here.
What we have is a reference to a global variable that modifies it.
For some reason S-PLUS doesn't allow that, but R does. Why do you
think it's a bug in R?
Duncan Murdoch
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le to restrict the availability of updates to
your packages to the currently released R version. There are reasons
why people might not be up to date (e.g. only doing upgrades at a
specific time of year), but they'll still have access via CRAN to
older versions of your package.
Comp
On Mon, 19 Jan 2004 07:51:34 -0500, Frank E Harrell Jr
<[EMAIL PROTECTED]> wrote :
>On Sun, 18 Jan 2004 18:47:52 -0500
>Duncan Murdoch <[EMAIL PROTECTED]> wrote:
>> Changes always show up in r-devel (the main CVS branch, not the
>> mailing list) first. Package
On Mon, 19 Jan 2004 11:18:47 -0500, Paul Gilbert
<[EMAIL PROTECTED]> wrote :
>Duncan Murdoch wrote:
>
>> but they'll still have access via CRAN to
>> older versions of your package.
>
>Are you sure about that? I can't find old contributed packages, but it
ks around this bug. (You can download
yesterday's build from CRAN.) I'd be interested in hearing if you see
your original crash using this version, or whether it has been fixed
too.
Duncan Murdoch
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cumentation about what the format should
be, and it's not too obscure, I don't see a problem for Windows users
here. Non-Windows users (and the INSTALL script) should be prepared
to handle CR-LF line terminations, because not all editors make it
easy to avo
make sense to use
the same format as NEWS (and the Windows CHANGES file), or put those
two files into the new format. They are currently easy to edit
manually and easy to print and read. I don't think the same could be
said of an XML format, but I coul
a way that others can extend the S4 classes
representing the changelog information and we can immediately have a
foundation that supports growth and experimentation. We have already
seen issues about writing Perl scripts and trying to manage them in
the future to admit additions.
D.
Duncan Mur
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