Re: [Rd] R OS X
On May 24, 2005, at 9:11 AM, Volker Runkel wrote: with newest R.app (1.11) / R2.1.0a if a package is installed for the current user, it is not installed properly (does not get an installed version entry and is not loadable). If installed system wide it works. As Rob mentioned, you likely didn't select Add $RHOME/R/Library in Startup preferences of R.app. I just want to add for the record that R versions before 2.1.0a (including 2.1.0 release in particular) featured a bug that caused ~/ R/library to be always in .libPaths even if R.app or the user disabled it (in --gui=AQUA mode). Cheers, Simon __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R OS X
Hi Volker, Just tried this with 1 of the few packages I had not installed yet systemwide. In the Startup preferences I selected to add $Home/R/Library and restarted R. Then installed package its and loaded the library and ran the example. Can you try if that sequence works for you? A better alias for Mac questions is R-SIG-Mac. Regards, Rob On May 24, 2005, at 6:11 AM, Volker Runkel wrote: Hi, with newest R.app (1.11) / R2.1.0a if a package is installed for the current user, it is not installed properly (does not get an installed version entry and is not loadable). If installed system wide it works. The package I installed is xgobi. MAC OS X 10.4.1 Volker - - - - - - - - - - - -- -- --- -- - - - - - - - - - - - -- - - Dipl.-Biol. Volker Runkel Lehrstuhl f. Zoologie II www.biologie.uni- erlangen.de/zoo2 Staudtstr. 5 Telefon: 09131-85 28788 91058 Erlangen [EMAIL PROTECTED] erlangen.de - - - - - - - - - - - -- -- --- -- - - - - - - - - - - - -- - - __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R + OS X + gcc 3.5 = not quite there ..
On Jul 31, 2004, at 9:15 PM, Jan de Leeuw wrote: [cabledoc70:Developer/R/R-devel] deleeuw% bin/R Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : internal error in decompress1 I forgot to post it here, but the problem I had was in libz (thanks to Luke for some tips). When I used system's libz then the problems went away. I suspect the supplied libz is miscompiled in some way, however I had no time yet to track it down exactly. gfortran -fno-common -g -O2 -c ppr.f -o ppr.o /var/tmp//ccSqEJAf.s:8241:FATAL:Symbol __BLOCK_DATA already defined. Heh, I suspect it's the same code that my g77 cross-compiler hates, as I posed here few days ago ... got no response so far :/ and the bad restore file magic number errors are there as well. That's the libz thing: what happens is the following: first load opens the file as gzip, that should work, but for some reason it doesn't, so load falls back to raw mode and tries to read it as-is, however then the magic number is bogus since it's actually gzipped, so load fails. If you use system's libz the file is decompressed correctly. Cheers, Simon __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R + OS X + gcc 3.5 = not quite there ..
I tried R-devel (07/31/04) with setenv CC gcc-3.5 setenv F77 gfortran setenv CXX g++-3.5 Here gfortran is g-95, version 3.5, from Gaurav's site. Configure goes fine, build goes fine, except for problems with macro-expansion in plot.c, similar to the one you mention in starma.c. After clobbering those, the compile is allright, the base package builds fine, and the binary runs. There is a problem with loading packages, however (see below). == [cabledoc70:Developer/R/R-devel] deleeuw% bin/R Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : internal error in decompress1 R : Copyright 2004, The R Foundation for Statistical Computing Version 2.0.0 Under development (unstable) (2004-07-30), ISBN 3-900051-00-3 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for a HTML browser interface to help. Type 'q()' to quit R. library() Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : internal error in decompress1 == With R-patched (07/31/04) there are no problems with plot.c, but there is the problem with starma.c (I guess a cpp-3.5 bug). Even when fixing starma.c the package stats still refuses to build because of == gfortran -fno-common -g -O2 -c ppr.f -o ppr.o /var/tmp//ccSqEJAf.s:8241:FATAL:Symbol __BLOCK_DATA already defined. make[5]: *** [ppr.o] Error 1 make[4]: *** [all] Error 2 make[3]: *** [all] Error 1 make[2]: *** [R] Error 1 make[1]: *** [R] Error 1 make: *** [R] Error 1 and the bad restore file magic number errors are there as well. == [ __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R OS X panther? (PR#5529)
On Venerdì, dic 5, 2003, at 00:48 Europe/Rome, [EMAIL PROTECTED] wrote: I have just used the RAqua.pkg to install R, and it doesn't work! I have Mac OS X 10.3, and the old version of R works OK, but the .pkg thing installed, and then when I double-click on the StartR application nothing happens. Nothing at all, no little icon bobbing up and down in the dock, just nothing. What have I done wrong? I didn't have to install the other packages did I? From the ReadMe.txt file If you want to install RAqua double click on the RAqua.pkg icon. You will be asked for a root password. RAqua will be installed on your system in the /Applications folder. (...) You should also install the other three packages: 1. libreadline (unless you have this package already installed) 2. tcltk (this is a must if you want to use tcltk) 3. libxml2 (if you want to use the XML package) - I guess you don't have the libreadline library installed on you system and this causes RAqua failing to launch. Please use the installer provided in the RAqua.dmg archive. Also follow Thomas L. suggestion (as a general rule when a OSX application fails to run or quits unexpectedly) to look at the Console application inside the Applications/Utilities folder on your system stefano Bronwyn Carlisle Biochemistry Department University of Otago Dunedin New Zealand Tel 64 3 479 7704 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-devel __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R OS X panther? (PR#5529)
On Fri, 5 Dec 2003 [EMAIL PROTECTED] wrote: I have just used the RAqua.pkg to install R, and it doesn't work! I have Mac OS X 10.3, and the old version of R works OK, but the .pkg thing installed, and then when I double-click on the StartR application nothing happens. Nothing at all, no little icon bobbing up and down in the dock, just nothing. What have I done wrong? I didn't have to install the other packages did I? If you open a Console window (in Applications | Utilities | Console) you may get some more informative error messages. -thomas __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
