Re: [Rd] fortran 90 underscore error

2011-03-15 Thread Prof Brian Ripley
We have no position about Fortran 90. We provide the means to specify an F90 compiler and note that its use is not portable as not all platforms have one. (A very few are still using gcc3 with g77.) This simply is not an R issue, and seems specific to your unstated platform (*PLEASE* do

[Rd] Feature request: txtProgressBar with ability to write to arbitrary stream

2011-03-15 Thread Andreas Borg
Hi all, I use txtProgressBar to monitor progress of large computations. What I miss is the ability to redirect the progress bar to a stream other than stdout, specifically to the message stream. This would be useful for running Sweave scripts: When redirected to stderr, the bar could be

Re: [Rd] Standardized Pearson residuals

2011-03-15 Thread John Maindonald
Peter Dalgaard: It would also be nice for teaching purposes if glm or summary.glm had a pearsonchisq component and a corresponding extractor function, but I can imagine that there might be arguments against it that haven't occured to me. Plus, I doubt that anyone wants to touch glm unless

Re: [Rd] Standardized Pearson residuals

2011-03-15 Thread Jari Oksanen
On 15/03/11 13:17 PM, peter dalgaard pda...@gmail.com wrote: On Mar 15, 2011, at 04:40 , Brett Presnell wrote: Background: I'm currently teaching an undergrad/grad-service course from Agresti's Introduction to Categorical Data Analysis (2nd edn) and deviance residuals are not used in

Re: [Rd] Feature request: txtProgressBar with ability to write to arbitrary stream

2011-03-15 Thread Matt Shotwell
Here's a temporary fix; reassign 'cat' in the environment of 'txtProgressBar': tpbEnv - new.env() assign(cat, function(...) cat(file=stderr(),...), tpbEnv) environment(txtProgressBar) - tpbEnv Best, Matt On 03/15/2011 05:37 AM, Andreas Borg wrote: Hi all, I use txtProgressBar to monitor

Re: [Rd] Standardized Pearson residuals

2011-03-15 Thread peter dalgaard
On Mar 15, 2011, at 13:42 , John Maindonald wrote: Peter Dalgaard: It would also be nice for teaching purposes if glm or summary.glm had a pearsonchisq component and a corresponding extractor function, but I can imagine that there might be arguments against it that haven't occured to me.

Re: [Rd] Standardized Pearson residuals

2011-03-15 Thread peter dalgaard
On Mar 15, 2011, at 14:22 , Jari Oksanen wrote: On 15/03/11 13:17 PM, peter dalgaard pda...@gmail.com wrote: On Mar 15, 2011, at 04:40 , Brett Presnell wrote: Background: I'm currently teaching an undergrad/grad-service course from Agresti's Introduction to Categorical Data Analysis

Re: [Rd] Feature request: txtProgressBar with ability to write to arbitrary stream

2011-03-15 Thread Duncan Murdoch
On 15/03/2011 8:46 AM, Matt Shotwell wrote: Here's a temporary fix; reassign 'cat' in the environment of 'txtProgressBar': tpbEnv- new.env() assign(cat, function(...) cat(file=stderr(),...), tpbEnv) environment(txtProgressBar)- tpbEnv I would suggest renaming the function as well. What's

Re: [Rd] Feature request: txtProgressBar with ability to write to arbitrary stream

2011-03-15 Thread Greg Snow
You could use winProgressBar (windows only) or TkProgressBar (tcltk package required) instead, then nothing is output to the console/standard out but you still have a visual of your progress. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare greg.s...@imail.org

[Rd] object not found whilst loading namespace

2011-03-15 Thread Max Kuhn
I've been updating a package and, when installing a local devel version, I get an error object 'confusionMatrix' not found whilst loading namespace. Looking around online, it appears that this might be related to loading a specific RData file, but it doesn't seem to be the case AFAICT. I've

Re: [Rd] object not found whilst loading namespace

2011-03-15 Thread Max Kuhn
Please disregard the last email... The issue was a syntactical error in a file that, alphabetically, comes before confusionMatrix.R in the package. The odd thing was that the problem in this file did not throw and error (or I would have easily found it). I decided to source the R files one by

Re: [Rd] object not found whilst loading namespace

2011-03-15 Thread Duncan Murdoch
On 11-03-15 9:59 PM, Max Kuhn wrote: Please disregard the last email... The issue was a syntactical error in a file that, alphabetically, comes before confusionMatrix.R in the package. The odd thing was that the problem in this file did not throw and error (or I would have easily found it). I

[Rd] .libPaths() on Windows may return duplicated paths

2011-03-15 Thread Henrik Bengtsson
In R v2.12.2 patched (2011-03-13 r54787) and also in R v2.13.0 devel (2011-03-15 r54806), .libPaths() may return the multiple paths referring to the same normalized path name. Here is an example from Rterm --vanilla using R v2.12.2 patched: paths - .libPaths(c(C:/, C:\\)) paths [1] C:/ [2]