Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-19 10:03 PM, Gabor Grothendieck wrote: On Fri, Apr 19, 2013 at 8:47 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-19 5:37 PM, Kevin Coombes wrote: Having finally found some free time, I was going to use it to update a bunch of R packages from 2.15 to 3.0. I am running

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Hadley Wickham
Just curious: how often do you use the Windows find command? We have put instructions in place for people to run the install process with a renamed Rtools find command (which I think is the only conflict). The issue is that more users who want to use the command line commands are familiar

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham h.wick...@gmail.com wrote: Just curious: how often do you use the Windows find command? We have put instructions in place for people to run the install process with a renamed Rtools find command (which I think is the only conflict). The issue

Re: [Rd] Publishing my Package on CRAN

2013-04-20 Thread Uwe Ligges
On 19.04.2013 06:38, liuyipei wrote: Hi, I have a simple package with two functions. It essentially implements estimators and data simulation for a paper I am writing for immunology (and in some sense, ecology). How long is the typical CRAN review process Typically less than 12 hours.

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham h.wick...@gmail.com wrote: Just curious: how often do you use the Windows find command? We have put instructions in place for people to run the install process with a renamed Rtools find command

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham h.wick...@gmail.com wrote: Just curious: how often do you use the Windows find command? We have put

Re: [Rd] Linux distribution with gcc 4.8 and AddressSanitizer -- solved

2013-04-20 Thread Thomas Petzoldt
It works! After some hours of compilation, reading the docs and testing, I got it now working and was able to reproduce (and fix) the reported error message. Then ingredients of the successful AdressSanitizer (ASAN) system were: - Fedora 19 Alpha RC4 with gcc 4.8 on VirtualBox, - manual

Re: [Rd] how to control the environment of a formula

2013-04-20 Thread Duncan Murdoch
On 13-04-19 2:57 PM, Thomas Alexander Gerds wrote: hmm. I have tested a bit more, and found this perhaps more difficult solve situation. even though I delete x, since x is part of the output of the formula, the size of the object is twice as much as it should be: test - function(x){ x -

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham h.wick...@gmail.com wrote: Just curious: how often do you use

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Kevin Coombes
On 4/20/2013 12:54 PM, Duncan Murdoch wrote: On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45 AM, Hadley Wickham h.wick...@gmail.com

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 1:54 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 10:45

Re: [Rd] how to control the environment of a formula

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 1:44 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-19 2:57 PM, Thomas Alexander Gerds wrote: hmm. I have tested a bit more, and found this perhaps more difficult solve situation. even though I delete x, since x is part of the output of the formula, the

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-20 2:02 PM, Kevin Coombes wrote: On 4/20/2013 12:54 PM, Duncan Murdoch wrote: On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-20 11:09 AM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 2:21 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-20 2:02 PM, Kevin Coombes wrote: On 4/20/2013 12:54 PM, Duncan Murdoch wrote: On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 11:49 AM, Duncan Murdoch murdoch.dun...@gmail.com

Re: [Rd] Publishing my Package on CRAN

2013-04-20 Thread Henrik Bengtsson
If you're not aware of it, you should know of: http://cran.r-project.org/web/packages/policies.html /Henrik On Sat, Apr 20, 2013 at 8:42 AM, Uwe Ligges lig...@statistik.tu-dortmund.de wrote: On 19.04.2013 06:38, liuyipei wrote: Hi, I have a simple package with two functions. It

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Duncan Murdoch
On 13-04-20 2:39 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at 2:21 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-04-20 2:02 PM, Kevin Coombes wrote: On 4/20/2013 12:54 PM, Duncan Murdoch wrote: On 13-04-20 12:30 PM, Gabor Grothendieck wrote: On Sat, Apr 20, 2013 at

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Kevin Coombes
On 4/20/2013 1:21 PM, Duncan Murdoch wrote: On 13-04-20 2:02 PM, Kevin Coombes wrote: On 4/20/2013 12:54 PM, Duncan Murdoch wrote: It's not a change to Rtools, it's a change is to the build system in R: it allows you to rename sort or find in your own copy of Rtools, and R will use whatever

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Hadley Wickham
As far as I can tell, the steps you are recommending take place in an earlier build step. This would require the user who wants to do this to rebuild Rtools in its entirety, which is more trouble than it is likely to be worth. Especially when you can avoid the problem by using your own batch

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-20 Thread Gabor Grothendieck
On Sat, Apr 20, 2013 at 9:13 PM, Hadley Wickham h.wick...@gmail.com wrote: As far as I can tell, the steps you are recommending take place in an earlier build step. This would require the user who wants to do this to rebuild Rtools in its entirety, which is more trouble than it is likely to

Re: [Bioc-devel] package download statistics

2013-04-20 Thread Robert M. Flight
Sweet Dan, that is good to know. I realize of course you would only have stats for the Bioconductor.org server. That is still pretty useful. -Robert On Fri, Apr 19, 2013 at 1:42 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: On Fri, Apr 19, 2013 at 8:51 AM, Robert M. Flight rfligh...@gmail.com