[Rd] solve.default(): solve.qr() or qr.solve() in warning

2018-04-07 Thread Henrik Bengtsson
If base::solve.default() is called with a 'qr' object, the following will take place: if(inherits(a, "qr")) { warning("solve.default called with a \"qr\" object: use 'qr.solve'") return(solve.qr(a, b, tol)) } Note how the warning says that qr.solve() should be used,

Re: [R-pkg-devel] Cannot submit package due to misspell note

2018-04-07 Thread David Sterratt
|On the subject of spell-checking, to avoid false positives when I'm checking the package, in the directory above the package directory I create a file called .spell_ignore with one word per line, and then run|: |||devtools::spell_check("pkg/", dict="en_GB", ignore=read.table(".spell_ignore",

Re: [Bioc-devel] Update of miRBaseVersions.db annotation package

2018-04-07 Thread Stefan Haunsberger
Hi, thanks for your fast reply. I've fixed the issues and get no error messages when running BiocCheck. This is the updated version: https://drive.google.com/open?id=1rJcs2W5fcfc0Cq74QHfNfk0mu2xJ5JJ9 Thanks and kind regards, Stefan On Fri, Apr 6, 2018 at 7:58 PM Van Twisk, Daniel <