Re: [Rd] RTools40 Error - sh: line 1: gcc: command not found

2022-11-29 Thread Gene Leynes
Thanks. Not sure how I ended up on 40 instead of 42. After deleting the 40 version and installing the 42 version, the 42 installer seemed to create path variables for 40. I just edited that however and the jsonlite test worked. I do think that it would be advisable to tell users to check the

Re: [Rd] RTools40 Error - sh: line 1: gcc: command not found

2022-11-29 Thread Tomas Kalibera
On 11/28/22 23:33, Gene Leynes wrote: Thanks. Not sure how I ended up on 40 instead of 42. After deleting the 40 version and installing the 42 version, the 42 installer seemed to create path variables for 40. I just edited that however and the jsonlite test worked. Rtools42 is not creating

Re: [R-pkg-devel] Logical Inconsistency of check regarding URL?

2022-11-29 Thread Ivan Krylov
Dear Michael, On Tue, 29 Nov 2022 08:19:40 +0100 "Dr. habil. Michael Thrun" wrote: > URL: https://www.deepbionics.org (moved to > https://mthrun.github.io/index) > From: DESCRIPTION > Status: 301 > Message: Moved Permanently > Please change http --> https, add trailing slashes, or follow

Re: [R-pkg-devel] Logical Inconsistency of check regarding URL?

2022-11-29 Thread hugo . gruson+R
Dear Michael, I second Ivan's suggestion to use a custom domain on your GitHub Pages website and I also want to add that this solves your certificate issue as a nice side-effect. GitHub will automatically create a certificate for you, for free, via Let's Encrypt:

Re: [R-pkg-devel] Two packages with the same name

2022-11-29 Thread Peter Carbonetto
Thanks, Dirk and Uwe, for your helpful replies. I have learned from this situation that there is some risk involved in depending on a package that is not available in CRAN or on Bioconductor. Peter On Mon, Nov 28, 2022 at 1:18 PM Uwe Ligges wrote: > > > On 28.11.2022 19:36, Dirk Eddelbuettel

Re: [R-pkg-devel] LAPACK errors in r-devel only

2022-11-29 Thread ASLETT, LOUIS J.M.
Thank you so much Simon, I had completely missed this change in passing strings to Fortran and the new approach which will be enforced from R 4.3.0. A very interesting read and I think you're right -- making those changes is compiling now on r-hub, so I've attempted a new CRAN submission and

Re: [R-pkg-devel] Single page reference manual in html format

2022-11-29 Thread Jeroen Ooms
Hi Jonathan, I've done a first attempt at a package to generate one-page html reference manuals. The package is called 'postdoc' and you can read about it here: https://ropensci.org/blog/2022/11/29/postdoc-docs/ To get a quick impression, find example manuals for base-R packages here:

Re: [Bioc-devel] Builds suddenly failing

2022-11-29 Thread Kern, Lori
I can reproduce this locally using the most recent R and packages. It could be a dependency of your package changed or a change in base R itself. Please investigate and make sure you are using the latest version of R and all the latest versions of Bioconductor/R packages. BiocManager::install

Re: [Bioc-devel] Give commit access to new author

2022-11-29 Thread Kern, Lori
I can assist with this but need additional information to create a Bioconductor Git Credentials account. What is her name? Does she have a personal github account that we could reuse username for the Bioconductor Git Credentials account. Cheers, Lori Shepherd - Kern Bioconductor Core Team

[Bioc-devel] Builds suddenly failing

2022-11-29 Thread Garrett Jenkinson
I recently (over past couple weeks) started receiving notices like the one below, despite not having pushed any changes to my package for quite some time (and all builds passing previously). Was there a change to the build system or requirements that could be causing this? Thank you, Garrett