Re: [Rd] Problem with R_registerRoutines
Sorry, resending with correct subject line.
I didn't find the development version of your package but the latest version
archived on CRAN uses Rcpp, RcppArmadillo.
Since the latest versions of Rcpp and Armadillo support registration, it may be
something related to RcppAttributes() or similar. I think that you don't need
to do registration manually.
I had a similar problem but when I realised the above, I discarded everything
generated by Rcpp/RcppArmadillo, Installed their latest versions and compared
my package to freshly generated packages by Rcpp.package.skeleton() and
RcppArmadillo.package.skeleton().
(Since I had old-ish version of R and Rdevel, I updated them too. )
I believe that you also need to import something from Rcpp (but not from
RcppArmadillo). Try the following line
importFrom(Rcpp, evalCpp)
in NAMESPACE (I believe that it is generated by both, Rcpp.package.skeleton()
and RcppArmadillo.package.skeleton()).
The path issue on Windows is a separate one. I typically start a command window
from a batch file which sets the paths and environment variables maybe more
defensively, and the above removed the "registration" warning. But using
devtools from a different session still gives it.
Georgi Boshnakov
--
Message: 5
Date: Tue, 27 Feb 2018 07:21:18 +
From:
To:
Cc: ,
Subject: Re: [Rd] Problem with R_registerRoutines
Message-ID:
<548d52560d5bde45aec4ef876bf2a194012d3...@s-dc-estb01-j.net1.cec.eu.int>
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Martin,
I did not use --as-cran on Linux, when I do, I also see the error there.
So most likely something is wrong and you're right that the package would not
be accepted on CRAN, but I'm running out of ideas for how to solve this
problem. I have tried to modify the initialization file in lots of different
ways, so far nothing helps.
Jon
From: Martin Maechler [maech...@stat.math.ethz.ch]
Sent: 23 February 2018 18:56
To: SKOIEN Jon (JRC-ISPRA)
Cc: jeroeno...@gmail.com; r-devel@r-project.org
Subject: Re: [Rd] Problem with R_registerRoutines
>>>>>
>>>>> on Fri, 23 Feb 2018 15:43:43 + writes:
> Thanks a lot for your answer Jeroen!
> I should have mentioned that I had actually only checked with the
win-builder, as I did not have R-devel installed on my computer.
> But based on your answer I installed R-devel locally on a Linux-server
(Redhat), and the package could be checked without the NOTE. So you might be
right that this is a windows issue. However, another package that I am
maintaining does not get any notes from the check on the win-builder (including
fortran-code), so there is still something I don't understand here.
> Anyway, does this mean that the package might be accepted on CRAN without
further changes?
at least not automatically, and not very probably in my gut feeling... but I
may be wrong.
Did you use R CMD check --as-cran on Linux ?
Martin
> Thanks,
> Jon
>
> From: Jeroen Ooms [jeroeno...@gmail.com]
> Sent: 23 February 2018 13:36
> To: SKOIEN Jon (JRC-ISPRA)
> Cc: r-devel
> Subject: Re: [Rd] Problem with R_registerRoutines
> On Windows this warning may be a false positive if R cannot find
> "objdump.exe" which is required for this check. I think this is
> actually a bug in R because it should be looking for "objdump.exe"
> inside BINPREF (where gcc is) rather than on the PATH.
> Can you check if you get the same warning if you upload the package to
> https://win-builder.r-project.org ?
> On Fri, Feb 23, 2018 at 10:28 AM, wrote:
>> Dear list,
>>
>> I am trying to update a package to pass the CRAN-checks.
>> But I am struggling with the following note:
>>
>> File 'psgp/libs/i386/psgp.dll':
>> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
>> File 'psgp/libs/x64/psgp.dll':
>> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
>>
>> It is good practice to register native routines and to disable symbol
>> search.
>>
>>
>> I did already run:
>> tools::package_native_routine_registration_skeleton(".")
>> This gave me some code, including a function R_init_psgp, which includes
calls to the functions above, and also the names of the C++ functions to be
called from R.
>> I first saved this code in registerDynamicSymbol.c and added
.registration = TRUE to useDynLib in the NAMESPACE file.
>> I still get the error above. As I saw
Re: [Rd] Problem with R_registerRoutines
Martin,
I did not use --as-cran on Linux, when I do, I also see the error there.
So most likely something is wrong and you're right that the package would not
be accepted on CRAN, but I'm running out of ideas for how to solve this
problem. I have tried to modify the initialization file in lots of different
ways, so far nothing helps.
Jon
From: Martin Maechler [maech...@stat.math.ethz.ch]
Sent: 23 February 2018 18:56
To: SKOIEN Jon (JRC-ISPRA)
Cc: jeroeno...@gmail.com; r-devel@r-project.org
Subject: Re: [Rd] Problem with R_registerRoutines
>>>>>
>>>>> on Fri, 23 Feb 2018 15:43:43 + writes:
> Thanks a lot for your answer Jeroen!
> I should have mentioned that I had actually only checked with the
win-builder, as I did not have R-devel installed on my computer.
> But based on your answer I installed R-devel locally on a Linux-server
(Redhat), and the package could be checked without the NOTE. So you might be
right that this is a windows issue. However, another package that I am
maintaining does not get any notes from the check on the win-builder (including
fortran-code), so there is still something I don't understand here.
> Anyway, does this mean that the package might be accepted on CRAN without
further changes?
at least not automatically, and not very probably in my gut
feeling... but I may be wrong.
Did you use R CMD check --as-cran
on Linux ?
Martin
> Thanks,
> Jon
>
> From: Jeroen Ooms [jeroeno...@gmail.com]
> Sent: 23 February 2018 13:36
> To: SKOIEN Jon (JRC-ISPRA)
> Cc: r-devel
> Subject: Re: [Rd] Problem with R_registerRoutines
> On Windows this warning may be a false positive if R cannot find
> "objdump.exe" which is required for this check. I think this is
> actually a bug in R because it should be looking for "objdump.exe"
> inside BINPREF (where gcc is) rather than on the PATH.
> Can you check if you get the same warning if you upload the package to
> https://win-builder.r-project.org ?
> On Fri, Feb 23, 2018 at 10:28 AM, wrote:
>> Dear list,
>>
>> I am trying to update a package to pass the CRAN-checks.
>> But I am struggling with the following note:
>>
>> File 'psgp/libs/i386/psgp.dll':
>> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
>> File 'psgp/libs/x64/psgp.dll':
>> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
>>
>> It is good practice to register native routines and to disable symbol
>> search.
>>
>>
>> I did already run:
>> tools::package_native_routine_registration_skeleton(".")
>> This gave me some code, including a function R_init_psgp, which includes
calls to the functions above, and also the names of the C++ functions to be
called from R.
>> I first saved this code in registerDynamicSymbol.c and added
.registration = TRUE to useDynLib in the NAMESPACE file.
>> I still get the error above. As I saw that the file has different names
in other packages, I have also tried to save it psgp_init.c, and in init.cpp,
still with the same error message.
>>
>> I have read the relevant part of the R extensions manual, but could not
find anything that could help me with this problem.
>> I have had a look at the similar files in other packages (including one
of my own, which works), and the initialization seems fine to me.
>> There is surely something I have overlooked, is anyone able to give me a
hint to where I might look? The code is in C++, not sure if that could have
anything to do with the problem?
>>
>> Thanks,
>> Jon
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> __
>> R-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
> __
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Problem with R_registerRoutines
>>>>>
>>>>> on Fri, 23 Feb 2018 15:43:43 + writes:
> Thanks a lot for your answer Jeroen!
> I should have mentioned that I had actually only checked with the
win-builder, as I did not have R-devel installed on my computer.
> But based on your answer I installed R-devel locally on a Linux-server
(Redhat), and the package could be checked without the NOTE. So you might be
right that this is a windows issue. However, another package that I am
maintaining does not get any notes from the check on the win-builder (including
fortran-code), so there is still something I don't understand here.
> Anyway, does this mean that the package might be accepted on CRAN without
further changes?
at least not automatically, and not very probably in my gut
feeling... but I may be wrong.
Did you use R CMD check --as-cran
on Linux ?
Martin
> Thanks,
> Jon
>
> From: Jeroen Ooms [jeroeno...@gmail.com]
> Sent: 23 February 2018 13:36
> To: SKOIEN Jon (JRC-ISPRA)
> Cc: r-devel
> Subject: Re: [Rd] Problem with R_registerRoutines
> On Windows this warning may be a false positive if R cannot find
> "objdump.exe" which is required for this check. I think this is
> actually a bug in R because it should be looking for "objdump.exe"
> inside BINPREF (where gcc is) rather than on the PATH.
> Can you check if you get the same warning if you upload the package to
> https://win-builder.r-project.org ?
> On Fri, Feb 23, 2018 at 10:28 AM, wrote:
>> Dear list,
>>
>> I am trying to update a package to pass the CRAN-checks.
>> But I am struggling with the following note:
>>
>> File 'psgp/libs/i386/psgp.dll':
>> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
>> File 'psgp/libs/x64/psgp.dll':
>> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
>>
>> It is good practice to register native routines and to disable symbol
>> search.
>>
>>
>> I did already run:
>> tools::package_native_routine_registration_skeleton(".")
>> This gave me some code, including a function R_init_psgp, which includes
calls to the functions above, and also the names of the C++ functions to be
called from R.
>> I first saved this code in registerDynamicSymbol.c and added
.registration = TRUE to useDynLib in the NAMESPACE file.
>> I still get the error above. As I saw that the file has different names
in other packages, I have also tried to save it psgp_init.c, and in init.cpp,
still with the same error message.
>>
>> I have read the relevant part of the R extensions manual, but could not
find anything that could help me with this problem.
>> I have had a look at the similar files in other packages (including one
of my own, which works), and the initialization seems fine to me.
>> There is surely something I have overlooked, is anyone able to give me a
hint to where I might look? The code is in C++, not sure if that could have
anything to do with the problem?
>>
>> Thanks,
>> Jon
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> __
>> R-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
> __
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Problem with R_registerRoutines
Thanks a lot for your answer Jeroen!
I should have mentioned that I had actually only checked with the win-builder,
as I did not have R-devel installed on my computer.
But based on your answer I installed R-devel locally on a Linux-server
(Redhat), and the package could be checked without the NOTE. So you might be
right that this is a windows issue. However, another package that I am
maintaining does not get any notes from the check on the win-builder (including
fortran-code), so there is still something I don't understand here.
Anyway, does this mean that the package might be accepted on CRAN without
further changes?
Thanks,
Jon
From: Jeroen Ooms [jeroeno...@gmail.com]
Sent: 23 February 2018 13:36
To: SKOIEN Jon (JRC-ISPRA)
Cc: r-devel
Subject: Re: [Rd] Problem with R_registerRoutines
On Windows this warning may be a false positive if R cannot find
"objdump.exe" which is required for this check. I think this is
actually a bug in R because it should be looking for "objdump.exe"
inside BINPREF (where gcc is) rather than on the PATH.
Can you check if you get the same warning if you upload the package to
https://win-builder.r-project.org ?
On Fri, Feb 23, 2018 at 10:28 AM, wrote:
> Dear list,
>
> I am trying to update a package to pass the CRAN-checks.
> But I am struggling with the following note:
>
> File 'psgp/libs/i386/psgp.dll':
> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
> File 'psgp/libs/x64/psgp.dll':
> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
>
> It is good practice to register native routines and to disable symbol
> search.
>
>
> I did already run:
> tools::package_native_routine_registration_skeleton(".")
> This gave me some code, including a function R_init_psgp, which includes
> calls to the functions above, and also the names of the C++ functions to be
> called from R.
> I first saved this code in registerDynamicSymbol.c and added .registration =
> TRUE to useDynLib in the NAMESPACE file.
> I still get the error above. As I saw that the file has different names in
> other packages, I have also tried to save it psgp_init.c, and in init.cpp,
> still with the same error message.
>
> I have read the relevant part of the R extensions manual, but could not find
> anything that could help me with this problem.
> I have had a look at the similar files in other packages (including one of my
> own, which works), and the initialization seems fine to me.
> There is surely something I have overlooked, is anyone able to give me a hint
> to where I might look? The code is in C++, not sure if that could have
> anything to do with the problem?
>
> Thanks,
> Jon
>
>
>
>
>
>
>
>
>
>
>
> __
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Problem with R_registerRoutines
On Windows this warning may be a false positive if R cannot find
"objdump.exe" which is required for this check. I think this is
actually a bug in R because it should be looking for "objdump.exe"
inside BINPREF (where gcc is) rather than on the PATH.
Can you check if you get the same warning if you upload the package to
https://win-builder.r-project.org ?
On Fri, Feb 23, 2018 at 10:28 AM, wrote:
> Dear list,
>
> I am trying to update a package to pass the CRAN-checks.
> But I am struggling with the following note:
>
> File 'psgp/libs/i386/psgp.dll':
> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
> File 'psgp/libs/x64/psgp.dll':
> Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
>
> It is good practice to register native routines and to disable symbol
> search.
>
>
> I did already run:
> tools::package_native_routine_registration_skeleton(".")
> This gave me some code, including a function R_init_psgp, which includes
> calls to the functions above, and also the names of the C++ functions to be
> called from R.
> I first saved this code in registerDynamicSymbol.c and added .registration =
> TRUE to useDynLib in the NAMESPACE file.
> I still get the error above. As I saw that the file has different names in
> other packages, I have also tried to save it psgp_init.c, and in init.cpp,
> still with the same error message.
>
> I have read the relevant part of the R extensions manual, but could not find
> anything that could help me with this problem.
> I have had a look at the similar files in other packages (including one of my
> own, which works), and the initialization seems fine to me.
> There is surely something I have overlooked, is anyone able to give me a hint
> to where I might look? The code is in C++, not sure if that could have
> anything to do with the problem?
>
> Thanks,
> Jon
>
>
>
>
>
>
>
>
>
>
>
> __
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Problem with R_registerRoutines
Dear list,
I am trying to update a package to pass the CRAN-checks.
But I am struggling with the following note:
File 'psgp/libs/i386/psgp.dll':
Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
File 'psgp/libs/x64/psgp.dll':
Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
It is good practice to register native routines and to disable symbol
search.
I did already run:
tools::package_native_routine_registration_skeleton(".")
This gave me some code, including a function R_init_psgp, which includes calls
to the functions above, and also the names of the C++ functions to be called
from R.
I first saved this code in registerDynamicSymbol.c and added .registration =
TRUE to useDynLib in the NAMESPACE file.
I still get the error above. As I saw that the file has different names in
other packages, I have also tried to save it psgp_init.c, and in init.cpp,
still with the same error message.
I have read the relevant part of the R extensions manual, but could not find
anything that could help me with this problem.
I have had a look at the similar files in other packages (including one of my
own, which works), and the initialization seems fine to me.
There is surely something I have overlooked, is anyone able to give me a hint
to where I might look? The code is in C++, not sure if that could have anything
to do with the problem?
Thanks,
Jon
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
