Re: [Rd] R CMD Sweave versus Sweave() on Windows
Bernd
.Renviron is not being read when you do R CMD ... This is documented,
but still puzzling to me. I solved this by using
Sys.setenv(SWEAVE_STYLEPATH_DEFAULT = TRUE)
in my .Rprofile (which is being read by R CMD ...). If you were on
linux you could also put it inside your shell profile (like ,.bashrc).
Kasper
On Thu, Apr 21, 2011 at 6:44 AM, Pfaff, Bernhard Dr.
bernhard_pf...@fra.invesco.com wrote:
Dear list subscriber,
I am quite puzzled by the behaviour of processing Sweave files within an R
session, i.e.
Sweave(foo.Rnw) versus R CMD Sweave foo.Rnw
In the former the environmental variable 'SWEAVE_STYLEPATH_DEFAULT = TRUE' is
obeyed (this is set in etc/Renviron.site as well as under the users home
directory in .Renviron). That is the hard-coded path to Sweave.sty is
included in the resultant tex-file, whereas if the Sweave file is processed
from cmd.exe as R CMD Sweave foo.Rnw, only \usepackage{Sweave} is included.
Any pointers are much appreciated.
Best,
Bernhard
Output of sessionInfo():
sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
[3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics datasets grDevices utils methods base
other attached packages:
[1] fortunes_1.4-1
Dr. Bernhard Pfaff
Director
Global Asset Allocation
Invesco Asset Management Deutschland GmbH
An der Welle 5
D-60322 Frankfurt am Main
Tel: +49 (0)69 29807 230
Fax: +49 (0)69 29807 178
www.institutional.invesco.com
Email: bernhard_pf...@fra.invesco.com
Geschäftsführer: Karl Georg Bayer, Bernhard Langer, Dr. Jens Langewand,
Alexander Lehmann, Christian Puschmann
Handelsregister: Frankfurt am Main, HRB 28469
Sitz der Gesellschaft: Frankfurt am Main
*
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Re: [Rd] R CMD Sweave versus Sweave() on Windows
On Thu, 21 Apr 2011, Pfaff, Bernhard Dr. wrote:
Dear list subscriber,
I am quite puzzled by the behaviour of processing Sweave files within an R
session, i.e.
Sweave(foo.Rnw) versus R CMD Sweave foo.Rnw
In the former the environmental variable 'SWEAVE_STYLEPATH_DEFAULT =
TRUE' is obeyed (this is set in etc/Renviron.site as well as under
the users home directory in .Renviron). That is the hard-coded path
to Sweave.sty is included in the resultant tex-file, whereas if the
Sweave file is processed from cmd.exe as R CMD Sweave foo.Rnw, only
\usepackage{Sweave} is included.
Any pointers are much appreciated.
R CMD Sweave does not read the startup files. Try runnning
R --vanilla and Sweave(foo.Rnw): you will see the same.
Best,
Bernhard
Output of sessionInfo():
sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
[3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics datasets grDevices utils methods base
other attached packages:
[1] fortunes_1.4-1
Dr. Bernhard Pfaff
Director
Global Asset Allocation
Invesco Asset Management Deutschland GmbH
An der Welle 5
D-60322 Frankfurt am Main
Tel: +49 (0)69 29807 230
Fax: +49 (0)69 29807 178
www.institutional.invesco.com
Email: bernhard_pf...@fra.invesco.com
Geschäftsführer: Karl Georg Bayer, Bernhard Langer, Dr. Jens Langewand,
Alexander Lehmann, Christian Puschmann
Handelsregister: Frankfurt am Main, HRB 28469
Sitz der Gesellschaft: Frankfurt am Main
*
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Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax: +44 1865 272595__
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Re: [Rd] R CMD Sweave versus Sweave() on Windows
On Thu, 21 Apr 2011, Pfaff, Bernhard Dr. wrote:
Dear list subscriber,
I am quite puzzled by the behaviour of processing Sweave
files within an R session, i.e.
Sweave(foo.Rnw) versus R CMD Sweave foo.Rnw
In the former the environmental variable
'SWEAVE_STYLEPATH_DEFAULT =
TRUE' is obeyed (this is set in etc/Renviron.site as well
as under the
users home directory in .Renviron). That is the hard-coded path to
Sweave.sty is included in the resultant tex-file, whereas if the
Sweave file is processed from cmd.exe as R CMD Sweave foo.Rnw, only
\usepackage{Sweave} is included.
Any pointers are much appreciated.
R CMD Sweave does not read the startup files. Try runnning R
--vanilla and Sweave(foo.Rnw): you will see the same.
Dear Prof. Ripley,
many thanks for your swift reply. This is indeed correct and educative --thanks
for this; but now I am kind of curious where this different behaviour compared
to version 2.12.0 has been announced or can be found? I have read the NEWS file
and the Windows specific NEWS of the latest release, but was not able to find
any pointer. That is, if I issue 'R CMD Sweave foo.Rnw' in cmd.exe with R
version 2.12.0, the hard-coded path to Sweave.sty is included and hence
environmental variables contained in the startup files are read.
Asked differently, is there a way such that R CMD Sweave does read the startup
files under R 2.13.0?
re: Kasper, many thanks for your reply. Incidentally, I have had
'Sys.setenv(SWEAVE_STYLEPATH_DEFAULT = TRUE)' directive already included in
my .Rprofile, but as Prof. Ripley correcly pointed out, these settings are not
taken effect.
Best,
Bernhard
Best,
Bernhard
Output of sessionInfo():
sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=German_Germany.1252
LC_CTYPE=German_Germany.1252 [3]
LC_MONETARY=German_Germany.1252 LC_NUMERIC=C [5]
LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics datasets grDevices utils methods base
other attached packages:
[1] fortunes_1.4-1
Dr. Bernhard Pfaff
Director
Global Asset Allocation
Invesco Asset Management Deutschland GmbH An der Welle 5
D-60322 Frankfurt am Main
Tel: +49 (0)69 29807 230
Fax: +49 (0)69 29807 178
www.institutional.invesco.com
Email: bernhard_pf...@fra.invesco.com
Geschäftsführer: Karl Georg Bayer, Bernhard Langer, Dr. Jens
Langewand, Alexander Lehmann, Christian Puschmann
Handelsregister: Frankfurt am Main, HRB 28469 Sitz der
Gesellschaft:
Frankfurt am Main
*
Confidentiality Note: The information contained in this
...{{dropped:10}}
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax: +44 1865 272595
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R CMD Sweave versus Sweave() on Windows
On Thu, Apr 21, 2011 at 6:44 AM, Pfaff, Bernhard Dr.
bernhard_pf...@fra.invesco.com wrote:
Dear list subscriber,
I am quite puzzled by the behaviour of processing Sweave files within an R
session, i.e.
Sweave(foo.Rnw) versus R CMD Sweave foo.Rnw
In the former the environmental variable 'SWEAVE_STYLEPATH_DEFAULT = TRUE' is
obeyed (this is set in etc/Renviron.site as well as under the users home
directory in .Renviron). That is the hard-coded path to Sweave.sty is
included in the resultant tex-file, whereas if the Sweave file is processed
from cmd.exe as R CMD Sweave foo.Rnw, only \usepackage{Sweave} is included.
Any pointers are much appreciated.
Best,
Bernhard
Output of sessionInfo():
sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
[3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics datasets grDevices utils methods base
other attached packages:
[1] fortunes_1.4-1
SWEAVE_STYLEPATH_DEFAULT is automatically set in Sweave.bat found here
(its part of the batchfiles distribution but does not require any
other batch file in order to run it):
http://batchfiles.googlecode.com/svn/trunk/Sweave.bat
This was only just added and has not been tested yet but if anyone
would like to try it just put it anywhere on your Windows PATH (or
current directory) and issue a command like this from the Windows
console:
Sweave myfile.Rnw
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email: ggrothendieck at gmail.com
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