and I don't see
the message.
Duncan Murdoch
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the man page.
Duncan Murdoch
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, and
especially on Windows, but I think a better fix should be made. I
won't have time to do it until after 2.0.0.
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Murdoch
Thank you
-Hem Nalini Morzaria
Duncan Murdoch wrote:
On Fri, 8 Oct 2004 23:57:45 +0200 (CEST), [EMAIL PROTECTED]
wrote:
Full_Name: Hem Nalini Morzaria Luna
Version: 2.00.00
OS: Windows XP
Submission from: (NULL) (128.104.98.229)
When using the plot(), when no previous graphics
)-release (i686-pc-cygwin)
Copyright (C) 2002 Free Software Foundation, Inc.
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the appearance of the GUI, I changed the font type, size, and font
and background colors.
Please give exact details of how to reproduce this error.
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This has nothing to do with write.table. The column names in x are
x and x.1.
This is documented in the NEWS file:
o data.frame(check.names = TRUE) (the default) enforces unique
names, as S does.
Duncan Murdoch
On Mon, 25 Oct 2004 10:36:48 +0200 (CEST), [EMAIL PROTECTED] wrote
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be
excluded?
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fix these (if they haven't been fixed already).
Duncan Murdoch
-mike
Page 4, first paragraph of 2.1.4: 'objects which they contain' - 'objects
which contain'
Page 5, second paragraph of 2.1.10 'environment can be accesses' -
'environment
can be accessed'
Page 13, second paragraph of 3.3.4
month02
day 24
language R
Could someone else please deal with this? I have trouble with test
builds right now.
Duncan Murdoch
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installed 2.1-8 and ran your code
in R-2.0.1 with no problem.
In any case, this looks more like an mclust problem than an R problem;
if you're using the current version, you should follow up with the
maintainer, Ron Wehrens [EMAIL PROTECTED].
Duncan Murdoch
= nx, nx - 1, trunc(lx))
ifelse(ly = ny, ny - 1, trunc(ly))
would probably be a better fix, but I'd really like to see an example
of this in action. Could you email me a dataset where you see it?
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saving the new preferences
first. As a result, I did not have an Rconsole file in My Documents.
This might be the reason why the problem was not reproducible by the
development team.
I think there's still something else: I don't see it when I follow
your instructions above.
Duncan Murdoch
the
prediction and a new observation) rather than the standard error
(i.e. the stddev of the prediction).
Duncan Murdoch
Marek Ancukiewicz
n - 10
x - 1:n
y - x
y[c(2,4,6)] - y[c(2,4,6)] + 0.1
y[c(3,5,7)] - y[c(3,5,7)] - 0.1
a - lm(y~x)
rms - sqrt(sum(a$residuals^2)/(n-2))
s - covmat(a)*rms^2
Murdoch
cheers
dave
--please do not edit the information below--
Version:
platform = i386-pc-linux-gnu
arch = i386
os = linux-gnu
system = i386, linux-gnu
status =
major = 2
minor = 0.1
year = 2004
month = 11
day = 15
language = R
Search Path:
.GlobalEnv, package:methods
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Peter Dalgaard wrote:
[EMAIL PROTECTED] writes:
Full_Name: Michael Hoffman
Version: 2.1.0
OS: Linux (Fedora Core 3, kernel 2.6.11-1.14_FC3)
Submission from: (NULL) (193.62.199.8)
help(arrows) says:
arrows(x0, y0, x1, y1, length = 0.25, angle = 30, code = 2,
col = par(fg),
, but I'd like to hear from someone on a different
platform...
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. This is fixed now in the patched version. It
should show up in the snapshot builds on CRAN by tomorrow.
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on CRAN, so that's what I'd expect in this case.
Duncan Murdoch
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on windows() and related devices the first text
drawn could be improperly sized. (PR#7860).
If not, please download a newer copy of R-patched, and see if you can
still reproduce the bug. I can't reproduce it in a recent build.
Duncan Murdoch
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you're done, you can send me the files and I'll review and commit the
changes.
Duncan Murdoch
[EMAIL PROTECTED] wrote:
Full_Name: Gavin Simpson
Version: 2.1.0-patched (1-Jun-2005)
OS: Linux (Fedora Core 3)
Submission from: (NULL) (128.40.32.76)
axis.Date() insists on labelling tick
Duncan Murdoch wrote:
Huntsinger, Reid wrote:
Sorry, I was looking at 2.0.1 when I meant to be looking at 2.1.0. The line
numbers for the latter are 161-179 and line 164 is the one with what I think
is a typo.
Reid Huntsinger
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL
(dead ~ dose, family = binomial(link = logit)))
Error in .Call(logit_link, mu) : cannot resolve native routine
Execution halted
I'm cc'ing this to R-bugs so we don't forget it, but I'm not going to be
able to fix it down myself.
Duncan Murdoch
, it doesn't always happen:
new(foo, bar = expression(1+1))
An object of class foo
Slot bar:
expression(1 + 1)
x - expression(1+1)
x
expression(1 + 1)
eval(x)
[1] 2
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The following is a bug or mis-design in help(package=):
showhelp - function(packageName) help(package=packageName)
showhelp(utils)
Error in .find.package(pkgName, lib.loc, verbose = verbose) :
none of the packages were found
The problem is that it calls library(help=) with
)
And for Windows users, I am putting binary builds online at
http://www.stats.uwo.ca/faculty/murdoch/software/r-devel
as time permits. They won't be daily, but there should be a few more
before the 10th.
Duncan Murdoch
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.
I'll fix this.
Duncan Murdoch
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web page
http://www.stats.uwo.ca/faculty/murdoch/software/r-devel, but will
be soon. Check the date on the file to see when I've updated it.
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matters?
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to install multiple packages at once, and
that makes sense, but it requires multiple selections to be enabled in
the file selection menu. There are a lot of other options to standard
Windows file dialogs, but I can't spot any that would really be
appropriate here. Can anyone else?
Duncan Murdoch
to choose, or a warning or error about the
ambiguity).
* who is the person to decide what a generic function should look
like, and
* who owns the right to the method name normalize?
The author of the package makes the decisions and owns the names in
that package.
Duncan Murdoch
need are bigger changes that make all of our global flags unnecessary.
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to be a vector, I get this warning, so where is it
coming from? Is it good or bad to say that orientation is a vector?
What implications does it have?
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On Mon, 02 Jun 2003 22:22:52 -0400, you wrote:
This fails, because testing the base package uses Orthodont
from package nlme, and so make check fails if run before
make recommended. This should maybe be changed in this file INSTALL.
Done.
Duncan Murdoch
²)).
This sounds like it might be related to the Windows FAQ 2.18, i.e. an
MSVCRT.DLL bug, though I think those were with the keyboard handler,
nothing to do with scan(). I'll be able to take a look next week on a
Win98 machine, but not in time for the 1.7.1 release, unfortunately.
Duncan Murdoch
('eulerzyx', 'orientation')
eulerzyx - function(psi, theta, phi)
new('eulerzyx', x = cbind(psi, theta, phi))
Can anyone tell me what that error message means? Is it something
I've done wrong, or a problem with the methods package or the checks?
Duncan Murdoch
On Fri, 13 Jun 2003 13:18:23 -0400, John Chambers wrote:
Duncan Murdoch wrote:
x - eulerzyx(1,0,0)4bb
Error: Trying to get slot validity from an object of a basic class
(NULL) with no slots
Execution halted
The code has a NULL object that was supposed to be a class definition
On Fri, 13 Jun 2003 13:18:23 -0400, you wrote:
It would be nice to be able to get a dump from the R CMD check
evaluation--maybe someone can suggest how.
If I just cut all the preamble from the Rout file and paste it into
the console, I get the same error. Here's a traceback(), I'm not sure
-existent directory, you would see that error.
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,
as I miswrote in my previous message) bug. That's the normal way I do
cut and paste, since the buttons aren't available in SDI mode.
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Cygwin is not a supported platform. You should use MinGW when
compiling for Windows.
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to coerce my class to data.frame, and
it's failing.
What's necessary to put a nonstandard object into a data.frame?
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point precision reduced by some
buggy DLL or video driver.
There are probably other explanations. The calculation is inherently
unstable; it might be that Brian did it under a different phase of the
moon, and that's why he got the right answer.
Duncan Murdoch
?
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On Mon, 7 Jul 2003 16:31:12 +0200 (MET DST), you wrote:
In 1.7.1 and today's r-patched in Windows, starting a continuation
line with a tab in a DESCRIPTION file causes the continuation to be
lost.
This was a Windows-specific bug, now fixed.
Duncan Murdoch
of packages into the menu, but mark
some of them as unavailable and display the explanation if those are
selected? I'd guess lots of Rgui users never look at the binary
directory themselves, they let Rgui do it.
Duncan Murdoch
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On Wed, 16 Jul 2003 17:16:02 +0200 (MET DST), [EMAIL PROTECTED] wrote :
In src/modules/lapack/Lapack.c, there are small typos in an pair of error
messages.
Fixed in R-patched. Thanks!
Duncan Murdoch
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I'd like to give a copy of an R package to someone using S-PLUS. It
doesn't just run as-is, it'll need changes. Has anyone written any
general guidelines on ways to port in that direction?
Duncan Murdoch
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to be asking for this sort of
detailed help; I guess I'll try over in s-news.
Duncan Murdoch
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] TRUE
and sure enough, file1.txt has been overwritten.
There was a bug in the file.copy code; I'll submit a patch.
Duncan Murdoch
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], from[okay])
okay
}
Duncan Murdoch
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to the
package maintainer. They are not R bugs.
Duncan Murdoch
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should), set this in the Destino field (sorry, that the name in
spanish, don't know what it is in english).
It's called Target in English versions of Windows. You can edit it
by right-clicking on the icon, and choosing properties. It shows up
on the Shortcut page.
Duncan Murdoch
/faculty/murdoch/software/r-devel/
as I currently do (irregularly) with development builds.
Duncan Murdoch
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rsync rsync.r-project.org::
to see a list of the available directories.
It's not quite as convenient as anon cvs, but it's pretty close.
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might be set. I'd guess by a
year from now there'll be substantial progress, but I'm not sure when
the first signs of it will appear.
Duncan Murdoch
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On Thu, 21 Aug 2003 20:16:24 +0200, you wrote:
I think it works to use
STATISTIC - sum(sort((x - E) ^ 2 / E, decreasing = TRUE))
instead: this starts by summing the big values, and hence if at all
slightly 'underestimates' the real value, which is fine for the
comparisons.
Looks
into his code.
Duncan Murdoch
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-style null terminated strings. readChar can read
characters one at a time.
The right code to read This is a book. from file foo.txt is
readChar(foo.txt, rep(1, 15))
Duncan Murdoch
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value of pi actually carries more than 14
decimal places of precision, they don't compare equal as numbers, even
though the do compare equal when converted to character.
If you want to distinguish numbers and characters, use mode(1) ==
mode(1).
Duncan Murdoch
On Sun, 21 Sep 2003 16:58:10 -0500, you wrote:
On Sunday 21 September 2003 16:50, Duncan Murdoch wrote:
On Sun, 21 Sep 2003 11:23:57 +0200 (MET DST), you wrote:
This is not a bug! It works when compiling from clean sources.
I guess you have unpacked new sources over old sources? Please clean
On Mon, 22 Sep 2003 13:08:06 +0200, [EMAIL PROTECTED]
wrote :
On Mon, 22 Sep 2003 06:07:00 -0400,
Duncan Murdoch (DM) wrote:
Yes, but then you end up doing a clean build, because it will also
delete the *.o files, etc. I don't think there's a concept of
deleting files that were
On Tue, 30 Sep 2003 11:34:27 +0100, you wrote:
Have you tried to make R under MSYS/MinGW, there would seem to be some
obvious benefits to this over the current collection of Cygwin tools?
I haven't tried that; what benefits do you see?
Duncan Murdoch
bars.)
If you just want to plot some bars where the area of the bar has no
meaning, use barplot() instead of hist().
Duncan Murdoch
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. Then log10 would call the generic which
would dispatch to the newly created method for Saikat's data.
My feeling is that the latter is what we really want.
Duncan Murdoch
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stabilizes a bit
more a stopping time? :-)
Duncan Murdoch
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compiled with gcc-3.2.?).
Is your binary self-compiled or from CRAN (Duncan Murdoch compiled the
CRAN binary with gcc-3.3.1 as well, AFAIK)?
I get it in Win XP with both 1.8.0 (compiled with 3.3.1) and 1.7.1
(compiled with 3.2.x). I'd guess one of two things:
- it depends on the runtime
-specific changes are in the main NEWS file, but there are less
of those than of Windows-specific changes, so it makes sense that
Windows keeps its changes separate.
Should I rename CHANGES to NEWS_Win or something similar in the next
release?
Duncan Murdoch
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On Wed, 22 Oct 2003 11:51:46 +0100 (BST), you wrote:
Without knowing the seed used it is impossible for us to reproduce this,
but I am not seeing anything strange.
I'm getting strange results in 1.8.0 for Windows too.
set.seed(1)
x - rnorm(50)
y - rnorm(50)
cor.test(x,y,method=spearman)
have a problem with the calling convention.
extern C __declspec(dllexport) SEXP __stdcall out(SEXP x, SEXP y)
R wants cdecl, not stdcall.
See my web page
http://www.stats.uwo.ca/faculty/murdoch/software/compilingDLLs/ for
some advice (as well as readme.packages for VC++ advice).
Duncan Murdoch
(I don't know what they did; they
might be for recording macros?)
Unfortunately, your problem is very rare, and you're the only one who
really has any chance of diagnosing it. It may indeed be time
consuming.
Duncan Murdoch
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().
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On Sat, 8 Nov 2003 16:03:19 + (GMT), you wrote:
On Sat, 8 Nov 2003, Duncan Murdoch wrote:
Another special connection (which might exist? I couldn't spot it)
would be one that read from a character vector, i.e. c('a','b','c')
would be read as 3 lines of one letter each. Then something
.
Duncan Murdoch
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.
Duncan Murdoch
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be able to update it, but I've just
uploaded a build of the beta to cran. Go to cran.r-project.org, and
follow the links to the precompiled binary of the base distribution
for Windows. The beta will be under the rpatched link sometime
tomorrow.
Duncan Murdoch
directory if you
want this to work relatively painlessly.
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need to do a regular
(non-debug) build now and make sure this doesn't break something else,
then I'll commit the change.
Duncan Murdoch
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version of R-patched, available at
http://cran.r-project.org/bin/windows/base/rpatched/. This probably
fixes that error. Please let me know two weeks ago if it doesn't
:-).
Duncan Murdoch
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like
//foo
/tmp//foo
Are these the same as
/foo
and
/tmp/foo? Are there any examples where an extra slash causes trouble?
Duncan Murdoch
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Duncan Murdoch [EMAIL PROTECTED] writes:
Gabor Grothendieck pointed out a bug to me in list.files(...,
full.name=TRUE), that essentially comes down to the fact that in
Windows it's not always valid to add a path separator (slash or
backslash) between a path specifier and a filename
to list.files() to say whether to add a path
separator, but it would be so rarely used that it doesn't seem to be
worth the effort.
Duncan Murdoch
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on and doesn't want to maintain the code.
If that happens to a package then the package will disappear from
CRAN, once it stops passing tests in new releases. If it's just a
function or two, what happens when it needs maintenance, or when it
gets orphaned?
Duncan Murdoch
do.
Duncan Murdoch
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reasonable to
handle them explicitly.
Duncan Murdoch
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the effects of some other bug that has been fixed.
Duncan Murdoch
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On Thu, 27 Nov 2003 09:39:16 -0500 (EST), Gabor Grothendieck
[EMAIL PROTECTED] wrote :
I don't think we should add another pattern matching syntax to R.
Filename pattern matching is a job for the shell or the OS.
Duncan Murdoch
Its not done by the shell in Windows, VAX/VMS
and probably
debugging options from
session to session? If not, does anyone know where to go for help
with it?
Duncan Murdoch
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the
last one, and perhaps should have a check that a namespace can load
properly.
5. Another suggestion: even though import(), export() etc. aren't
really functions, it would be nice if ?import and friends worked to
bring up a man page explaining the syntax and the details.
Duncan Murdoch
On Wed, 24 Dec 2003 13:57:44 -0500, I wrote:
Is there something I need to do to make sure the classes get exported?
Yes, there are exportClasses and exportMethods directives that
need to be in the NAMESPACE file, but so far they are only documented
in messages to this list.
Duncan Murdoch
is the one that comes with Cygwin, if there
isn't a standard approach.
Duncan Murdoch
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the features you want to make use of later.
I think it must be one of those. The executable is about 1/8 the size
of the bash executable.
Duncan Murdoch
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to the currently released R version. There are reasons
why people might not be up to date (e.g. only doing upgrades at a
specific time of year), but they'll still have access via CRAN to
older versions of your package.
Compatibility with S-PLUS is a lot harder, of course.
Duncan Murdoch
On Mon, 19 Jan 2004 07:51:34 -0500, Frank E Harrell Jr
[EMAIL PROTECTED] wrote :
On Sun, 18 Jan 2004 18:47:52 -0500
Duncan Murdoch [EMAIL PROTECTED] wrote:
Changes always show up in r-devel (the main CVS branch, not the
mailing list) first. Package developers should be keeping a
relatively
yesterday's build from CRAN.) I'd be interested in hearing if you see
your original crash using this version, or whether it has been fixed
too.
Duncan Murdoch
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On Tue, 20 Jan 2004 08:49:34 +0100, Martin Maechler
[EMAIL PROTECTED] wrote :
Of course R CMD check would have the harder job of also have
to work properly on non-Debian, non-Linux, even non-Unix systems..
For Windows, there's already the filename capitalization mess.
Just as long as the
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