Re: [Rd] Buidling R on Linux (Itanium) fails (PR#7897)

2005-05-26 Thread Christophe Pouzat 

Hi,

here is the configure command line I used for an Intel PIV processor 
with icc, ifort and the intel mkl:


./configure CC=icc CFLAGS=-O2 -mp -prec_div F77=ifort CXX=icc 
CXXFLAGS=-O2 -mp -prec_div FFLAGS=-C90 -w90 -w95 -mp -prec_div 
CPICFLAGS=-shared CXXPICFLAGS=-shared FPICFLAGS=-shared 
SHLIB_LDFLAGS=-shared SHLIB_CXXLDFLAGS=-shared --with-blas=-lmkl_lapack 
-lmkl -lguide -lpthread


In my experience using FPICFLAGS=-shared is mendatory to get the 
compilation working. The other options are mainly there to pass almost 
all the tests (except one) of make check.


Xtof.

[EMAIL PROTECTED] wrote:


Full_Name: Reinhold Bader
Version: 2.1.0
OS: SLES 9
Submission from: (NULL) (129.187.48.1)


I tried to build R using the Intel compilers (icc, ifort) and the Math Kernel
Libraries
for BLAS/LAPACK

Optimizations used were -O3, and the 
FPICFLAGS=-fpic

was exported.

The build failed with the following error message:
...
dumping R code in package 'methods'
Saving namespace image ...
initializing class and method definitions now ...Error in
makePrototypeFromClassDef(properties, ClassDef, immediate, where) :
   in making the prototype for class SClassExtension elements of the
prototype failed to match the corresponding slot class: coerce (class
character ), test (class character ), replace (class character ), simple
(class character ), dataPart (class character )
Error: .onLoad failed in 'loadNamespace' for 'methods'
Execution halted

I am not a R specialist; how do I continue from here?
make[4]: *** [../..

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only know how to use a hammer, every problem starts to look like a nail.
Stay away from that trap.
Richard B Johnson.
--

Christophe Pouzat
Laboratoire de Physiologie Cerebrale
CNRS UMR 8118
UFR biomedicale de l'Universite Paris V
45, rue des Saints Peres
75006 PARIS
France

tel: +33 (0)1 42 86 38 28
fax: +33 (0)1 42 86 38 30
web: www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html

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Re: [Rd] Buidling R on Linux (Itanium) fails (PR#7897)

2005-05-26 Thread Ei-ji Nakama 
 I tried to build R using the Intel compilers (icc, ifort) and the Math Kernel
 Libraries
 for BLAS/LAPACK
 
 Optimizations used were -O3, and the 
 FPICFLAGS=-fpic
 was exported.
 
 The build failed with the following error message:

I did not use MKL, but there was a problem to Intel compiler. 
An as follows memo at that time. 
Because there is not yet an option restraining an exception in C++ of
IA64, icpc is not usable.

http://www.nakama.ne.jp/memo/ia64_linux/

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e-mail : EIJI Nakama [EMAIL PROTECTED]

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