Re: [R] python

2009-11-22 Thread Romain Francois
On 11/21/2009 11:32 PM, Stefan Evert wrote: My hunch is that Python and R run at about the same speed, and both use C libraries for speedups (Python primarily via the numpy package). That's not necessarily true. There can be enormous differences between interpreted languages, and R appears

[R] Define return values of a function

2009-11-22 Thread Soeren . Vogel
I have created a function to do something: i - factor(sample(c(A, B, C, NA), 793, rep=T, prob=c(8, 7, 5, 1))) k - factor(sample(c(X, Y, Z, NA), 793, rep=T, prob=c(12, 7, 9, 1))) mytable - function(x){ xtb - x btx - x # do more with x, not relevant here cat(The table has been

Re: [R] Define return values of a function

2009-11-22 Thread baptiste auguie
hi, Try making your last line invisible( list(table=xtb, elbat=btx) ) HTH, baptiste 2009/11/22 Soeren.Vogel soeren.vo...@eawag.ch: I have created a function to do something: i - factor(sample(c(A, B, C, NA), 793, rep=T, prob=c(8, 7, 5, 1))) k - factor(sample(c(X, Y, Z, NA), 793, rep=T,

Re: [R] python

2009-11-22 Thread Stefan Evert
Sure, badly written R code does not perform as well as well written python code or C code. On the other hand badly written python code does not perform as well as well written R code. What happens when you try one of these : sum - sum( 1:N ) R runs out of memory and crashes. :-) I didn't

Re: [R] other decriptive stats packages

2009-11-22 Thread Jakson A. Aquino
On Sat, Nov 21, 2009 at 02:01:07PM -0800, frenchcr wrote: i just found the following list, i wondered if anybody could add to this as i have to characterize a large data set and am new to R...the list below was so helpfulcan you add to this??? Just to forestall confusion amongst those

Re: [R] python

2009-11-22 Thread Jean Legeande
Thank you Gabor, Romain and Stefan. Gabor this looks like really interesting for speeding up loops. I just have to install it and add jit(1) before a loop ! Is the result faster than Python ? I have seen the name of L. Tierney among the contributors. I guess it is good for MCMC :-) Best, Jean

Re: [R] Over-coloring facets on persp() plot

2009-11-22 Thread Duncan Murdoch
On 22/11/2009 1:07 AM, Marc Chiarini (Tufts) wrote: Dear R Community: Recently, I have managed to plot some really useful graphs of my research data using persp(). I have even figured out how to overplot rectangular regions (corresponding to submatrices) with a different color. This is

Re: [R] other decriptive stats packages

2009-11-22 Thread Tal Galili
Here is one more function for the list: whatis from the package: YaleToolkit See: http://cran.r-project.org/web/packages/YaleToolkit/ I also like using: ls() ls.str() And sometimes (for just one variable): stem (which can be viewd as an ascii histogram) Wonderful question and list, I hope for

Re: [R] other decriptive stats packages

2009-11-22 Thread Tal Galili
A few more came to mind: VIM package (for exploring missing data): http://cran.r-project.org/web/packages/VIM/index.html http://bm2.genes.nig.ac.jp/RGM2/index.php?scope=namequery=VIM And the basic commands: * edit (for seeing the dataframe as in a spreadsheet) And the commands: * head (and)

Re: [R] Define return values of a function

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 6:26 AM, soeren.vo...@eawag.ch wrote: I have created a function to do something: i - factor(sample(c(A, B, C, NA), 793, rep=T, prob=c(8, 7, 5, 1))) k - factor(sample(c(X, Y, Z, NA), 793, rep=T, prob=c(12, 7, 9, 1))) mytable - function(x){ xtb - x btx - x # do more

Re: [R] other decriptive stats packages

2009-11-22 Thread Liviu Andronic
On 11/21/09, frenchcr frenc...@btinternet.com wrote: are there any more packages that help decribe and explore data sets See numSummary() in Rcmdr. Liviu __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] Over-coloring facets on persp() plot

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 7:07 AM, Duncan Murdoch wrote: On 22/11/2009 1:07 AM, Marc Chiarini (Tufts) wrote: Dear R Community: Recently, I have managed to plot some really useful graphs of my research data using persp(). I have even figured out how to overplot rectangular regions

Re: [R] Over-coloring facets on persp() plot

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 9:18 AM, David Winsemius wrote: On Nov 22, 2009, at 7:07 AM, Duncan Murdoch wrote: On 22/11/2009 1:07 AM, Marc Chiarini (Tufts) wrote: Dear R Community: Recently, I have managed to plot some really useful graphs of my research data using persp(). I have even figured

[R] How to make a matrix of a number of factors?

2009-11-22 Thread Peng Yu
I use the following code to generate a matrix of factors. I'm wondering if there is a way to make it more general so that I can have any number of factors (not necessarily 5). a=3 b=4 c=5 d=6 e=7 A=1:a B=1:b C=1:c D=1:d E=1:e X=matrix(nr=a*b*c*d*e,nc=5) for(i_a in 1:a-1) { for(i_b in 1:b-1)

[R] Repeated measures unbalanced in a split-split design

2009-11-22 Thread Marcelo Laia
Hi, I have a experiment with block, plots, sub-plots, and sub-sub-plots with repeated measures and 3 factors (factorial design) when we have been observed diameter (mm), high (cm) and leaves number (count). However, we don't have one treatment in one factor, so, my design is unbalanced. On a

Re: [R] MASS loading error

2009-11-22 Thread Uwe Ligges
Erin Hodgess wrote: Dear R People: I just installed R-2.10.0 on Karmic Koala Ubuntu, via the sudo apt-get install r-base, etc. However, when I try to install an Rcmdr Plugin package, I get the following: install.packages(RcmdrPlugin.qual,depen=TRUE) Warning in

[R] How to make the assignment in a for-loop not affect variables outside the loop?

2009-11-22 Thread Peng Yu
I know that R is a dynamic programming language. But I'm wondering if there is a way to make the assignment in a for-loop not affect variables outside the loop. n=10 for(i in 1:n){ + n=3 + print(n) + } [1] 3 [1] 3 [1] 3 [1] 3 [1] 3 [1] 3 [1] 3 [1] 3 [1] 3 [1] 3 print(n) [1] 3

Re: [R] How to make a matrix of a number of factors?

2009-11-22 Thread baptiste auguie
Hi, Try this, do.call(expand.grid, lapply(7:3, seq, from=1)) HTH, baptiste 2009/11/22 Peng Yu pengyu...@gmail.com: I use the following code to generate a matrix of factors. I'm wondering if there is a way to make it more general so that I can have any number of factors (not necessarily

Re: [R] Metaplot Axis Annotation

2009-11-22 Thread Uwe Ligges
Ishwar Bridgelal wrote: Hello, We are looking to adjust the font size of the axis annotation on the graph that results from use of the metaplot() function. Metaplot seems to respond to cex and cex.lab to change those graphical parameters, but it doesn't respond to cex.axis. Is there a way to

Re: [R] How to make the assignment in a for-loop not affect variables outside the loop?

2009-11-22 Thread Uwe Ligges
Either use local as in: n=10 local(for(i in 1:n){ n=3 print(n) }) print(n) or write a function that is evaluated in its own environment: n=10 MyLoopFoo - function(){ for(i in 1:n){ n - 3 print(n) } } MyLoopFoo() print(n) Uwe Ligges Peng Yu wrote:

[R] Why F value and Pr are not show in summary() of an aov() result?

2009-11-22 Thread Peng Yu
I have the following code. I'm wondering why summary() doesn't show F value and Pr? Rscript multi_factor.R a=3 b=4 c=5 d=6 e=7 A=1:a B=1:b C=1:c D=1:d E=1:e X=matrix(nr=a*b*c*d*e,nc=5) colnames(X)=LETTERS[1:5] for(i_a in 1:a-1) { + for(i_b in 1:b-1) { + for(i_c in 1:c-1) { +

Re: [R] how to tell if its better to standardize your data matrix first when you do principal

2009-11-22 Thread Uwe Ligges
masterinex wrote: Hi guys , Im trying to do principal component analysis in R . There is 2 ways of doing it , I believe. One is doing principal component analysis right away the other way is standardizing the matrix first using s = scale(m)and then apply principal component analysis.

[R] how do i persuade IT to install R on PCs ?? ...and should I ??

2009-11-22 Thread frenchcr
Please help me persuade IT to install R on my computer! All suggestions welcome. Our IT department run scared when you mention software that they have no working experience of. I need to know the pros and cons of having R on corporate desktops. Please no funny stuff, this is quite a serious

[R] Computing multivariate normal probabilities. Was: Re: Problem with Numerical derivatives (numDeriv) and mvtnorm

2009-11-22 Thread Ravi Varadhan
Hi Torsten, It would be useful to warn the users that the multivariate normal probability calculated by pmvnorm using the GenzBretz algorithm is random, i.e. the result can vary between repeated executions of the function. This would prevent inappropriate use of pmvnorm such as computing

Re: [R] consecutive numbering of elements in a matrix

2009-11-22 Thread Jim Bouldin
Many thanks to Dimitris, William and David for very helpful answers which solved my problem. Being a relatve newb, I am confused by something in the solutions by Dimitris and David. #Create a matrix A as follows: A - matrix(sample(50, 21), 7, 3) A[sample(21, 5)] - NA;A [,1] [,2] [,3]

Re: [R] Why F value and Pr are not show in summary() of an aov() result?

2009-11-22 Thread Sundar Dorai-Raj
It's hard to read your code, so I won't comment on your specific example. So when all else fails read the documentation for ?summary.aov: They have columns ‘Df’, ‘Sum Sq’, ‘Mean Sq’, as well as ‘F value’ and ‘Pr(F)’ if there are non-zero residual degrees of freedom. So if you do

[R] scatter plot equation

2009-11-22 Thread Rofizah Mohammad
Hi, If I have 2D data set say (x,y) and I can do scatter plot by using plot(x,y) command. How can I add in this scatter plot the equations curve say 2X2 + 3Y2 – 6X – 7Y + 9 = 0. Regards Rofizah [[alternative HTML version deleted]] __

Re: [R] python

2009-11-22 Thread Peter Ehlers
Stefan Evert wrote: Sure, badly written R code does not perform as well as well written python code or C code. On the other hand badly written python code does not perform as well as well written R code. What happens when you try one of these : sum - sum( 1:N ) R runs out of memory and

Re: [R] scatter plot equation

2009-11-22 Thread Duncan Murdoch
On 22/11/2009 11:27 AM, Rofizah Mohammad wrote: Hi, If I have 2D data set say (x,y) and I can do scatter plot by using plot(x,y) command. How can I add in this scatter plot the equations curve say 2X2 + 3Y2 – 6X – 7Y + 9 = 0. You could do it using contour(), but you should use an equation

Re: [R] consecutive numbering of elements in a matrix

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 11:11 AM, Jim Bouldin wrote: Many thanks to Dimitris, William and David for very helpful answers which solved my problem. Being a relatve newb, I am confused by something in the solutions by Dimitris and David. #Create a matrix A as follows: A - matrix(sample(50,

Re: [R] scatter plot equation

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 11:27 AM, Rofizah Mohammad wrote: Hi, If I have 2D data set say (x,y) and I can do scatter plot by using plot(x,y) command. How can I add in this scatter plot the equations curve say 2X2 + 3Y2 – 6X – 7Y + 9 = 0. No executable example... so if you are too lazy to

[R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Tal Galili
Hello all, When using R for some time, one comes across more and more useful functions. But naturally we can't remember all of them, so I imagine some of you save these snippets of code. My question to you is how do you manage that code? Do you use special software, or archiving system? Any

Re: [R] python

2009-11-22 Thread Jean Legeande
Anyway I think it was just a toy example. Any additionnal information is welcome. Best, Jean 2009/11/22 Peter Ehlers ehl...@ucalgary.ca Stefan Evert wrote: Sure, badly written R code does not perform as well as well written python code or C code. On the other hand badly written python

Re: [R] how do i persuade IT to install R on PCs ?? ...and should I ??

2009-11-22 Thread Marc Schwartz
On Nov 22, 2009, at 5:14 AM, frenchcr wrote: Please help me persuade IT to install R on my computer! All suggestions welcome. Our IT department run scared when you mention software that they have no working experience of. I need to know the pros and cons of having R on corporate

[R] contour(): lines labels in different colours?

2009-11-22 Thread Ted Harding
Greetings, All! I want to draw contour lines in red, using contour(), but also have the contour labels (for the level-values) in black so that they will stand out against a coloured background already generated using filled.contour() (the background shades from green at low levels of risk to red

Re: [R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Marc Schwartz
On Nov 22, 2009, at 10:53 AM, Tal Galili wrote: Hello all, When using R for some time, one comes across more and more useful functions. But naturally we can't remember all of them, so I imagine some of you save these snippets of code. My question to you is how do you manage that code? Do

Re: [R] how do i persuade IT to install R on PCs ?? ...and should I ??

2009-11-22 Thread Ben Bolker
frenchcr frenchcr at btinternet.com writes: Please help me persuade IT to install R on my computer! All suggestions welcome. Our IT department run scared when you mention software that they have no working experience of. I need to know the pros and cons of having R on corporate

Re: [R] scatter plot equation

2009-11-22 Thread Rofizah Mohammad
Many thanks Duncan. I got the plot even I don't really understand the whole command.. I will study that later.. :-) Regards On Sun, Nov 22, 2009 at 4:44 PM, Duncan Murdoch murd...@stats.uwo.cawrote: On 22/11/2009 11:27 AM, Rofizah Mohammad wrote: Hi, If I have 2D data set say (x,y) and

Re: [R] AKIMA: z values at a set coordinate

2009-11-22 Thread Rhelp wanted
Dear Dr Hiemstra Thank you for taking the time to reply to my request. You are a very big help. regards and many thanks Sylvestre On Sat, Nov 21, 2009 at 10:57 AM, Paul Hiemstra p.hiems...@geo.uu.nlwrote: Hi Anonymous, (Maybe next time include your name) There are data objects in R that

Re: [R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Tal Galili
Hello Marc and Jeff, Thank you for replying. I am using winXP, and any recommendation for GUI based system will be welcomed. However, my initial question was not how to maintain code that I write and develop, but rather how to keep a filing system for other peoples code that I find useful. Here

Re: [R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Barry Rowlingson
On Sun, Nov 22, 2009 at 5:45 PM, Tal Galili tal.gal...@gmail.com wrote: Hello Marc and Jeff, Thank you for replying. I am using winXP, and any recommendation for GUI based system will be welcomed. However, my initial question was not how to maintain code that I write and develop, but

Re: [R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Marc Schwartz
Tal, I would still use Subversion. Think of Subversion as as an electronic filing system. You can organize code into project trees, with sub-folders and so forth. As you come across code snippets that you want to save, copy them to a file and commit the file to a project tree or sub-folder,

Re: [R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Tal Galili
Marc and Barry, many thanks for your detailed answers. Marc - I thank you for the links and ideas. Thanks to your advice I will look more into SVN in the future, although it sounds on the surface to require some learning curve, so It could take me some time to start using it. Barry - I am

[R] serialized plot object (2 years later)

2009-11-22 Thread Jack Tanner
About 2 years ago, Tobias Verbeke asked: I am looking for a way to capture the binary string that in normal use of graphics devices will bewritten to (most commonly) a file connection... Is there a way of capturing the binary `jpeg string' [generated by jpeg()]?

Re: [R] consecutive numbering of elements in a matrix

2009-11-22 Thread Dimitris Rizopoulos
one approach is the following: B - cbind(c(1:6, NA), c(1:3, NA,NA,NA, 4), c(1:3, NA,NA, 4,5)) matrix(B[order(col(B), B)], nrow(B), ncol(B)) I hope it helps. Best, Dimitris Jim Bouldin wrote: And think about the fact that row(A) and apply(is.na(A), 2, cumsum) will be identical in the case

Re: [R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Hans-Peter Suter
Marc - I thank you for the links and ideas. Thanks to your advice I will look more into SVN in the future, although it sounds on the surface to require some learning curve, so It could take me some time to start using it. If you consider investing time to learn a version control system, I

Re: [R] Computing multivariate normal probabilities. Was: Re: Problem with Numerical derivatives (numDeriv) and mvtnorm

2009-11-22 Thread stephane Luchini
I'm now making some trials with sadmvn which provides results similar to pmvnorm for optimization but I know compute my OPG estimator of the covariance matrix with sadmvn (by the way Ravi, when I was refering to exist in theory I was refering to the theory not to the computation - would an

[R] mac os X: mprobit fails to install

2009-11-22 Thread stephane Luchini
Hi all, any chance that someone got through the installation problem of mprobit on mac os X? Stephane __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Joe King
I accidentally sent this directly to the author and didn't reply to the whole list, I am sorry, I need to remember to hit reply all instead of reply to the R help list, heres my message: I keep a separate R file of code I commonly use but more generic. So if I am making contingency tables I say:

Re: [R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Carlos J. Gil Bellosta
Hello, I do keep a blog with R and non R related snippets of code. Besides that, something like Alfresco, Plone or other document management systems could be useful. Maybe the solution is too complex for a single user, but you can keep tags and other kind of metadata attached to your code

Re: [R] mac os X: mprobit fails to install

2009-11-22 Thread Phil Spector
Stephane - The check log indicated that malloc.h couldn't be found. Since that header file is located in /usr/include/sys on Macs, you could do the following: 1. Download mprobit_0.9-2.tar.gz from your local CRAN mirror. 2. At a terminal, type PKG_CFLAGS=-I/usr/include/sys R CMD

Re: [R] how to tell if its better to standardize your data matrix first when you do principal

2009-11-22 Thread masterinex
so under which cases is it better to standardize the data matrix first ? also is PCA generally used to predict the response variable , should I keep that variable in my data matrix ? Uwe Ligges-3 wrote: masterinex wrote: Hi guys , Im trying to do principal component analysis in

Re: [R] consecutive numbering of elements in a matrix

2009-11-22 Thread Jim Bouldin
Thank you Dimitris, that solves it exactly! I continue to be amazed at how a single line of code can be so powerful in R, containing so much information. Hard as hell to interpret though (for me). Jim one approach is the following: B - cbind(c(1:6, NA), c(1:3, NA,NA,NA, 4), c(1:3, NA,NA,

Re: [R] mac os X: mprobit fails to install

2009-11-22 Thread SL
I have tried your command but without success. Any idea? Here is my log: Macbook:$ PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz * Installing to library ‘/Users/stephaneluchini/Library/R/2.9/library’ * Installing *source* package ‘mprobit’ ... ** libs ** arch - i386 sh: make:

[R] How to get the factor level means with interaction term?

2009-11-22 Thread Peng Yu
I thought that the last two statements in the following code should give me the same results (what I want are the factor level means for factor 'A'). But they don't. I think that the last statement should give me the correct factor level means for 'A'. Could somebody let me know what the problems

Re: [R] Do you keep an archive of useful R code? and if so - how?

2009-11-22 Thread Nikhil Kaza
I 've used tiddlywiki a personal notebook for other things but not for R. It may be useful to write a css that separates out code from description. http://www.tiddlywiki.com/ On 22 Nov 2009, at 11:53AM, Tal Galili wrote: Hello all, When using R for some time, one comes across more and

[R] where is lme() that is referred by aov() help page?

2009-11-22 Thread Peng Yu
The help page of aov() mentions lme(). Does it refer to lme() in package nlme? __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

Re: [R] where is lme() that is referred by aov() help page?

2009-11-22 Thread Duncan Murdoch
On 22/11/2009 3:38 PM, Peng Yu wrote: The help page of aov() mentions lme(). Does it refer to lme() in package nlme? Yes, that's where the link takes you. Duncan Murdoch __ R-help@r-project.org mailing list

Re: [R] mac os X: mprobit fails to install

2009-11-22 Thread David Winsemius
There were quite a few implicit declaration warning messages when I followed Phil's advice, but I do seem to get a complete build on a Mac 10.5.8 running 64 bit R 2.10.0. Have you installed the Xcode package? The gcc-4.2? -- David. On Nov 22, 2009, at 3:15 PM, SL wrote: I have tried your

Re: [R] where is lme() that is referred by aov() help page?

2009-11-22 Thread Peng Yu
On Sun, Nov 22, 2009 at 2:42 PM, Duncan Murdoch murd...@stats.uwo.ca wrote: On 22/11/2009 3:38 PM, Peng Yu wrote: The help page of aov() mentions lme(). Does it refer to lme() in package nlme? Yes, that's where the link takes you. Should this information be mentioned in aov() help page?

Re: [R] Spatstat, markcorr, max. radius limited??

2009-11-22 Thread Rolf Turner
On 21/11/2009, at 12:01 AM, rudi1...@gmx.de wrote: Hello, could please somebody help me. I want to apply the mark correlation function but for radii up to 75 meters (in 75 individual 1m steps). Unfortunately, There is a sensible default for the values of the argument r at which the mark

Re: [R] mac os X: mprobit fails to install

2009-11-22 Thread stephane Luchini
Thanks. I have 10.5.8 with R 2.10.0 now (i still had 2.9 in my previous messages). I also have gcc-4.2 installed but no Xcode package. It still fails to install - can it be the Xcode package? Where can I find it - I don't have my install CDs with me and will not get them soon? Stephane

Re: [R] where is lme() that is referred by aov() help page?

2009-11-22 Thread Duncan Murdoch
On 22/11/2009 3:44 PM, Peng Yu wrote: On Sun, Nov 22, 2009 at 2:42 PM, Duncan Murdoch murd...@stats.uwo.ca wrote: On 22/11/2009 3:38 PM, Peng Yu wrote: The help page of aov() mentions lme(). Does it refer to lme() in package nlme? Yes, that's where the link takes you. Should this

[R] any equivalent SUM IF statement in R

2009-11-22 Thread ychu066
for example, i want to sum all the row entries if column 1 takes the value boy. anyone knows ? -- View this message in context: http://old.nabble.com/any-equivalent-SUM-IF-statement-in-R-tp26467889p26467889.html Sent from the R help mailing list archive at Nabble.com.

Re: [R] mac os X: mprobit fails to install

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 4:00 PM, stephane Luchini wrote: Thanks. I have 10.5.8 with R 2.10.0 now (i still had 2.9 in my previous messages). I also have gcc-4.2 installed but no Xcode package. It still fails to install - can it be the Xcode package? Where can I find it - I don't have my install

Re: [R] any equivalent SUM IF statement in R

2009-11-22 Thread Duncan Murdoch
On 22/11/2009 3:44 PM, ychu066 wrote: for example, i want to sum all the row entries if column 1 takes the value boy. anyone knows ? Subset then sum: sum(M[M[,1] == boy, ]) Duncan Murdoch __ R-help@r-project.org mailing list

Re: [R] any equivalent SUM IF statement in R

2009-11-22 Thread David Winsemius
Presumably you want all the columns _except_ column 1, right? Perhaps (no code, no test) : sum( dta[ dta[,1]==boy , -1 ] ) -- David. On Nov 22, 2009, at 3:44 PM, ychu066 wrote: for example, i want to sum all the row entries if column 1 takes the value boy. anyone knows ? -- View this

Re: [R] contour(): lines labels in different colours?

2009-11-22 Thread Peter Ehlers
Hi Ted, This won't solve your problem, but a small improvement might be to place the labels over the lines rather than the other way around. It will definitely avoid putting red lines over black ones: x - -6:16 z - outer(x,x) contour(z, labels=, col=2) contour(z, lty=0, labcex=1, add=TRUE)

Re: [R] how do i persuade IT to install R on PCs ?? ...and should I ??

2009-11-22 Thread RICHARD M. HEIBERGER
Please also look at the R document http://www.r-project.org/doc/R-FDA.pdf and ask your IT department to read this document Rich __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] how to tell if its better to standardize your data matrix first when you do principal

2009-11-22 Thread hadley wickham
You've asked the same question on stackoverflow.com and received the same answer. This is rude because it duplicates effort. If you urgently need a response to a question, perhaps you should consider paying for it. Hadley On Sun, Nov 22, 2009 at 12:04 PM, masterinex xevilgan...@hotmail.com

Re: [R] contour(): lines labels in different colours?

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 4:57 PM, Peter Ehlers wrote: Hi Ted, This won't solve your problem, but a small improvement might be to place the labels over the lines rather than the other way around. It will definitely avoid putting red lines over black ones: x - -6:16 z - outer(x,x) contour(z,

[R] how to generate balanced sample from two normal distribution

2009-11-22 Thread gcheer3
Good afternoon, I have a question on generating simple randomization data. Thanks for any suggestions. Two normal distribution N(0,1) and N(1,1) A: I want to generate 20 data, 10 from N(0,1) and 10 from (1,1). each observation's indicator (either is from N(0,1) or N(1,1) ) is randomized. I

Re: [R] mac os X: mprobit fails to install

2009-11-22 Thread Marc Schwartz
Xcode is available for download here: http://developer.apple.com/technology/xcode.html As David noted, you do need to register, but it is free. Note also that it is a 750 Mb download. HTH, Marc Schwartz On Nov 22, 2009, at 3:11 PM, David Winsemius wrote: On Nov 22, 2009, at 4:00 PM,

Re: [R] mac os X: mprobit fails to install

2009-11-22 Thread SL
Thanks to all, that was it! Xcode needed to be installed. For those who did not update to snow Leopard, things could be a bit tricky because apple did delete links to previous versions in search engines. On their site, one has to search through their download section. For snow leopard: version

Re: [R] how do i persuade IT to install R on PCs ?? ...and should I ??

2009-11-22 Thread stephen's mailinglist account
On Sun, Nov 22, 2009 at 11:14 AM, frenchcr frenc...@btinternet.com wrote: Please help me persuade IT to install R on my computer! All suggestions welcome. Our IT department run scared when you mention software that they have no working experience of. I need to know the pros and cons of

Re: [R] contour(): lines labels in different colours?

2009-11-22 Thread Duncan Murdoch
On 22/11/2009 5:21 PM, David Winsemius wrote: On Nov 22, 2009, at 4:57 PM, Peter Ehlers wrote: Hi Ted, This won't solve your problem, but a small improvement might be to place the labels over the lines rather than the other way around. It will definitely avoid putting red lines over black

Re: [R] contour(): lines labels in different colours?

2009-11-22 Thread Duncan Murdoch
On 22/11/2009 5:35 PM, Duncan Murdoch wrote: On 22/11/2009 5:21 PM, David Winsemius wrote: On Nov 22, 2009, at 4:57 PM, Peter Ehlers wrote: Hi Ted, This won't solve your problem, but a small improvement might be to place the labels over the lines rather than the other way around. It will

Re: [R] contour(): lines labels in different colours?

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 5:35 PM, Duncan Murdoch wrote: On 22/11/2009 5:21 PM, David Winsemius wrote: On Nov 22, 2009, at 4:57 PM, Peter Ehlers wrote: Hi Ted, This won't solve your problem, but a small improvement might be to place the labels over the lines rather than the other way around. It

[R] optim(,SANN...)

2009-11-22 Thread lloyd barcza
Hi, Can anyone please tell me is there a way to view the annealing schedule when using SANN is optim. I have tried setting report=1 in the control list, but cannot seem to get it to work? Ant help or suggestions would be appreciated! Thanks __

[R] Removing + and ? signs

2009-11-22 Thread Steven Kang
Hi all, I get an error message when trying to replace *+* or *?* signs (with empty space) from a string. x - asdf+,jkl? gsub(?, , x) Error message: Error in gsub(?, , x) : invalid regular expression '?' In addition: Warning message: In gsub(?, , x) : regcomp error: 'Invalid

[R] Missing/Incomplete Data Study

2009-11-22 Thread helpme
Hi, I have a project where unsupervised learning failed to produce rules using Weka. I wanted to know if there are any tools in R that can be used to assess how well timestamps of event, task, load, and hardware logs for completeness or missing and incomplete data to be able to know whether it

Re: [R] contour(): lines labels in different colours?

2009-11-22 Thread Ted Harding
Wow! (Top-posting for once, since there's no natural other place ...) Thanks Peter, David and Duuncan for the suggestions. I'll look at the later ones from David Duncan later (it's getting late here). However, as something to work on if you want to, here is a toy example, based on the same

Re: [R] how do i persuade IT to install R on PCs ?? ...and should I ??

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 4:45 PM, stephen's mailinglist account wrote: On Sun, Nov 22, 2009 at 11:14 AM, frenchcr frenc...@btinternet.com wrote: Please help me persuade IT to install R on my computer! All suggestions welcome. Our IT department run scared when you mention software that they

Re: [R] Removing + and ? signs

2009-11-22 Thread jim holtman
'?' is a metacharacter in a regular expression. You have to escape it: x - asdf+,jkl? gsub(?, , x) Error in gsub(?, , x) : invalid regular expression '?' In addition: Warning message: In gsub(?, , x) : regcomp error: 'Invalid preceding regular expression' # escape it gsub(\\?, , x)

Re: [R] Removing + and ? signs

2009-11-22 Thread Linlin Yan
Try this: gsub([?], , x) On Mon, Nov 23, 2009 at 7:01 AM, Steven Kang stochastick...@gmail.com wrote: Hi all, I get an error message when trying to replace *+* or *?* signs (with empty space) from a string. x - asdf+,jkl? gsub(?, , x) Error message: Error in gsub(?, , x) :  

Re: [R] Removing + and ? signs

2009-11-22 Thread Jorge Ivan Velez
Dear Steven, You were almost there: x - asdf+,jkl? gsub(\\?, , x) [1] asdf+,jkl gsub(\\+, , x) [1] asdf,jkl? Take a look at the Basic Regular Expressions section in ?regex for more details. HTH, Jorge On Sun, Nov 22, 2009 at 6:01 PM, Steven Kang wrote: Hi all, I get an error

Re: [R] Removing + and ? signs

2009-11-22 Thread Rolf Turner
On 23/11/2009, at 12:01 PM, Steven Kang wrote: Hi all, I get an error message when trying to replace *+* or *?* signs (with empty space) from a string. x - asdf+,jkl? gsub(?, , x) Error message: Error in gsub(?, , x) : invalid regular expression '?' In addition: Warning message:

Re: [R] Removing + and ? signs

2009-11-22 Thread Jorge Ivan Velez
And if you want to replace both + and ?, here is a suggestion: x - asdf+,jkl? gsub([?]|[+], , x) # [1] asdf,jkl HTH, Jorge On Sun, Nov 22, 2009 at 6:46 PM, Jorge Ivan Velez wrote: Dear Steven, You were almost there: x - asdf+,jkl? gsub(\\?, , x) [1] asdf+,jkl gsub(\\+, , x) [1]

Re: [R] Removing + and ? signs

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 6:01 PM, Steven Kang wrote: Hi all, I get an error message when trying to replace *+* or *?* signs (with empty space) from a string. x - asdf+,jkl? gsub(?, , x) Since both ? and + are special regex characters, to do both the substitutions at once you need to use

[R] How to change line width in heatmap.2()?

2009-11-22 Thread Peng Yu
I don't see an option to tune linewdith in heatmap.2(). Could somebody let me know how to tune the dendrogram line width? __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] how to prevent lattic barchart from drawing bar completely to the bottom/left of the chart

2009-11-22 Thread RICHARD M. HEIBERGER
?panel.barchart use the argument origin=0 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained,

Re: [R] contour(): lines labels in different colours?

2009-11-22 Thread Duncan Murdoch
On 22/11/2009 6:28 PM, (Ted Harding) wrote: Wow! (Top-posting for once, since there's no natural other place ...) Thanks Peter, David and Duuncan for the suggestions. I'll look at the later ones from David Duncan later (it's getting late here). However, as something to work on if you want to,

[R] Help about stability analysis in R software!!!

2009-11-22 Thread lugobueno
 Hello people!! I'm trying to make a statistical analysis of stability through to package 'Agricolae', and procedure 'stability.par', but I don't get conclude the analysis. The problem is in my data set, that have missing value, and I didn't manage interpret the 'NA' used to

Re: [R] contour(): lines labels in different colours?

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 8:01 PM, Duncan Murdoch wrote: On 22/11/2009 6:28 PM, (Ted Harding) wrote: Wow! (Top-posting for once, since there's no natural other place ...) Thanks Peter, David and Duuncan for the suggestions. I'll look at the later ones from David Duncan later (it's getting late

Re: [R] how to tell if its better to standardize your data matrix first when you do principal

2009-11-22 Thread masterinex
Hi Hadley , I really apreciate the suggestions you gave, It was helpful , but I still didnt quite get it all. and I really want to do a good job , so any comments would sure come helpful, please understand me . hadley wrote: You've asked the same question on stackoverflow.com and

Re: [R] how to generate balanced sample from two normal distribution

2009-11-22 Thread gcheer3
Thank you, Dennis. It really helps. That is what I want, for the first 10 obs in A, it is not necessary balanced. for the first 10 obs in B, it is balanced. But there is one thing I need maybe I didn't say it clear. I generate 20 observations first, I want permutation in these 20 then select

Re: [R] How do I change the colour and format for the trelli plot ?

2009-11-22 Thread ychu066
NICE!!! thanks Deepayan Sarkar wrote: On Thu, Nov 19, 2009 at 6:03 AM, ychu066 ychu...@aucklanduni.ac.nz wrote: http://old.nabble.com/file/p26418382/hist1.png hist1.png  i want three plots along on the side , how to i do that ?  and I also want to change the colour of the bars for

Re: [R] How do I change the colour and format for the trelli plot ?

2009-11-22 Thread ychu066
anyone know how to add some text on the panel ??? for example 2.5, 50 and 1000 are mearsured in Litre, and i want to put the units beside the measurements. How could i do that? ychu066 wrote: NICE!!! thanks Deepayan Sarkar wrote: On Thu, Nov 19, 2009 at 6:03 AM, ychu066

Re: [R] Help about stability analysis in R software!!!

2009-11-22 Thread David Winsemius
On Nov 22, 2009, at 8:19 PM, lugobueno wrote: Â Hello people!! I'm trying to make a statistical analysis of stability through to package 'Agricolae', and procedure 'stability.par', but I don't get conclude the analysis. The problem is in my data set, that have missing value,

[R] dynlm predict with newdata?

2009-11-22 Thread zubin
Hello, can one use predict, as you can with other model objects like lm, with dynlm to predict a new data set that is identical in field names, just a different time period. Be nice if you could, I don't really want to create a new data set with all the lags, hoping it would generate

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