[R] Shading in prediction intervals

2012-09-13 Thread Jonathan Zhang
I have the following code for the minimum and maximum of my prediction interval y.down=lines(x[x.order], set1.pred[,2][x.order], col=109) y.up=lines(x[x.order], set1.pred[,3][x.order], col=109) domain=min(x):max(x) polygon(c(domain,rev(domain)),c(y.up,rev(y.down)),col=109) It doesnt seem to

Re: [R] Error during matrix multiplication

2012-09-13 Thread Jeff Newmiller
You used neither str() nor dput(), you still haven't provided reproducible code (your code reads csv, but you did not supply csv), and you are posting in html as the posting guide requests that you not do (but you probably didn't read that either). A more verbose description of how to ask a

Re: [R] Shading in prediction intervals

2012-09-13 Thread Pascal Oettli
Hello, It is not a reproducible example. Regards, Pascal Le 12/09/13 14:38, Jonathan Zhang a écrit : I have the following code for the minimum and maximum of my prediction interval y.down=lines(x[x.order], set1.pred[,2][x.order], col=109) y.up=lines(x[x.order], set1.pred[,3][x.order],

Re: [R] Need help

2012-09-13 Thread R. Michael Weylandt
From: R. Michael Weylandt michael.weyla...@gmail.com To: Cc: pial das pial...@yahoo.com; r-help@r-project.org Sent: Wednesday, September 12, 2012 6:12 PM Subject: Re: [R] Need help If you want to solve it _numerically_ there are many options within R: if

[R] A problem of impulse response function about S-VAR

2012-09-13 Thread F. HP Chu
Dear All, I would like to use the package vars to get a impulse response function of a Structural VAR model. However, I got a wrong message and cannot deal with it. Here is my code: library(vars) data - read.table(data.txt, header=T) y1- data[,c(log_x1,log_x2,log_x3,log_x4,log_x5,log_x6)]

[R] Remove serial number column in a Dataframe into CSV

2012-09-13 Thread Rantony
Hi, i have an small doubt. How can we remove serial-number column while writing a dataframe in to a csv file ? for eg:- write.csv(MyDataFrame,c:/MyData.csv) name place --- --- 1 antonyuk 2 john usa 3 arjun ind here, in

[R] problematic p values for Dixon Q test

2012-09-13 Thread ronny
I am using R dixon.test in order to perform Q test for detection of outliers. The p-values for high Q values are consistent with the table in Rorabacher, D.B. (1991) http://www.flworkshop.com/sscs/dixon_test.pdf, but it seems that small Q-values get problematic p-values. For example:

[R] fractional balanced design conjoint analysis

2012-09-13 Thread Boer, Eric
L.S. We would like to generate fractional design for a conjoint analysis. For example we would like to reduce 2x2x2x2x3 -- 12-16 profiles. We tried the R-package conjoint and we found an article which describes how to make fractional design for these kinds of studies with Algdesign:

Re: [R] Remove serial number column in a Dataframe into CSV

2012-09-13 Thread R. Michael Weylandt
On Thu, Sep 13, 2012 at 8:47 AM, Rantony antony.akk...@ge.com wrote: Hi, i have an small doubt. How can we remove serial-number column while writing a dataframe in to a csv file ? for eg:- write.csv(MyDataFrame,c:/MyData.csv) name place --- --- 1

[R] random sampling inside a dataset

2012-09-13 Thread Gian Maria Niccolò Benucci
Hi all, I am wondering if do exist a function in R that allow me to sample or choose randomly the rows (i.e., samples) inside a given matrix. Thank you very much in advance. Cheers, -- Gian [[alternative HTML version deleted]] __

Re: [R] random sampling inside a dataset

2012-09-13 Thread Berend Hasselman
On 13-09-2012, at 10:42, Gian Maria Niccolò Benucci wrote: Hi all, I am wondering if do exist a function in R that allow me to sample or choose randomly the rows (i.e., samples) inside a given matrix. Use sample. Like this for example A - matrix(runif(8*4), nrow=8) A select.row -

[R] Inaccurate prediction in R

2012-09-13 Thread Vignesh Prajapati
Hello, After development of recommendation engine with the R, before removal of outliers from data-set value of residual standard error was 1351 and after removal of outlier its 100. Still there is no accurate prediction which gives 10% correct(near) prediction. For more fitting i also have tried

[R] rstudio client on the i-pad

2012-09-13 Thread Frans Marcelissen
Hi, The combination of ipad+rstudio (server) would be a fantastic combination-if it worked. It _is_ possible to run rstudio in the safari browser of the ipad, but the keyboard doesn't work correctly (blanks are inserted after each character), making it almost impossible to use. Does anyone know a

Re: [R] rstudio client on the i-pad

2012-09-13 Thread Rainer M Krug
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Wrong mailing list: http://rstudio.org/docs/help_with_r Cheers, Rainer On 13/09/12 11:20, Frans Marcelissen wrote: Hi, The combination of ipad+rstudio (server) would be a fantastic combination-if it worked. It _is_ possible to run rstudio in

Re: [R] Inaccurate prediction in R

2012-09-13 Thread R. Michael Weylandt
On Thu, Sep 13, 2012 at 10:15 AM, Vignesh Prajapati vign...@tatvic.com wrote: Hello, After development of recommendation engine with the R, before removal of outliers from data-set value of residual standard error was 1351 and after removal of outlier its 100. Still there is no accurate

Re: [R] rstudio client on the i-pad

2012-09-13 Thread R. Michael Weylandt
You should probably address this to RStudio (which is an independent commercial entity) directly: http://support.rstudio.org/ I've found them wonderfully responsive and capable, so I'm sure they'll be able to sort you out. Cheers, Michael On Thu, Sep 13, 2012 at 10:20 AM, Frans Marcelissen

Re: [R] R on Android

2012-09-13 Thread peter dalgaard
On Sep 12, 2012, at 14:24 , Simon Fry wrote: Hello again I tried to do everything how described on the page: http://rwiki.sciviews.org/doku.php?id=getting-started:installation:android So, i pushed the three files in the folder /sdcard/gcc Then i tried to extract the files with an

Re: [R] R on Android

2012-09-13 Thread R. Michael Weylandt
On Thu, Sep 13, 2012 at 11:28 AM, Simon Fry s@gmx.ch wrote: Hi Well i think my problem is, that i don't have the permissions to execute something in the folder. if i try: ./configure /sdcard/gcc or make /sdcard/gcc makeinstall /sdcard/gcc it only says permission denied if i trie

Re: [R] unzipping with ff

2012-09-13 Thread Wijffels, Jan
Hi Dave, You need to save the ff file before you quit R. As in ffsave(ffcolTest, file = somefolder\\ffTest') When you reopen R, you can now use ffload(same path as above). Regarding your question on if ff suits your needs. This is probably the case, I'm regularly using it for data size a lot

Re: [R] random sampling inside a dataset

2012-09-13 Thread Gian Maria Niccolò Benucci
Thank you very much for your help, I was wondering if is possible to sample randomly specifying to select in a particular group of data inside the matrix, for example only within the whole samples collected in 2011 I would randomly choose 20 random samples... Thanks a again, Gian On 13

Re: [R] random sampling inside a dataset

2012-09-13 Thread Duncan Murdoch
On 12-09-13 7:18 AM, Gian Maria Niccolò Benucci wrote: Thank you very much for your help, I was wondering if is possible to sample randomly specifying to select in a particular group of data inside the matrix, for example only within the whole samples collected in 2011 I would randomly choose

Re: [R] how to create a substraction matrix (subtract a row of every column from the same row in other columns)

2012-09-13 Thread Ben Bolker
csmeredith csmeredith at fs.fed.us writes: [snip] I want to create a matrix similar to a correlation matrix, but with the difference between the two values, like this x1 x2 x3 x4 x5 x1 x2-x1x3-x1 x4-x1 x5-x1 x2 x3-x2 x4-x2

Re: [R] help server slow

2012-09-13 Thread John Kane
It sounds like a local system problem. Are you running on a local intranet or have something cpu intenstive running in the background? John Kane Kingston ON Canada -Original Message- From: ldec...@comcast.net Sent: Wed, 12 Sep 2012 18:05:19 + (UTC) To: r-help@r-project.org

[R] I need help for svm package kernlab in R

2012-09-13 Thread okabes
I use the svm package kernlab .I have two question. In R library(kernlab) m=ksvm(xtrain,ytrain,type=C-svc,kernel=custom function, C=10) alpha(m) alphaindex(m) I can get alpha value and alpha index about package. 1. Assumption that number of sample are 20. number of support vectors are

[R] package installation problem.

2012-09-13 Thread bokaha guy
Dear friends from the R-community, I am djipie, bokaha and live in Germany. I am a student and user of R. During the installation of the package Metrics I had a pronlem as shown below: install.packages(Metrics) Warnung in install.packages(Metrics) : Argument 'lib' fehlt: nutze

[R] Zip a file

2012-09-13 Thread Rantony
Hi, How to zip a csv file ? i tried with zipfile.ZipFile - but it showing function could not find. Is there have any other way to zip files without installing any package ? - Thanks in advance Antony -- View this message in context: http://r.789695.n4.nabble.com/Zip-a-file-tp4643012.html

Re: [R] Remove serial number column in a Dataframe into CSV

2012-09-13 Thread Rantony
Thanks. From: Pramod [via R] [mailto:ml-node+s789695n4642989...@n4.nabble.com] Sent: Thursday, September 13, 2012 1:27 PM To: Akkara, Antony (GE Energy, Non-GE) Subject: Re: Remove serial number column in a Dataframe into CSV Add another argument to

[R] [newbie] aggregating table() results and simplifying code with loop

2012-09-13 Thread Davide Rizzo
Dear all, I'm looking for primary help at aggregating table() results and at writing a loop (if useful) My dataset ( http://goo.gl/gEPKW ) is composed of 23k rows, each one representing a point in the space of which we know the land cover over 10 years (column y01 to y10). I need to analyse it

Re: [R] how to create a substraction matrix (subtract a row of every column from the same row in other columns)

2012-09-13 Thread Rui Barradas
Hello, I'm not sure if this is what you want. dat - data.frame(matrix(1:25 + rnorm(25), ncol=5, dimnames=list(NULL, paste0(x, 1:5 d2 - apply(dat, 1, diff) nms - t(outer(names(dat), names(dat), paste0)) res - data.frame(difftype = nms[lower.tri(nms)], value = d2[lower.tri(d2, diag

[R] how to find end of a FASTA file

2012-09-13 Thread mail me
Hi: I am trying to find end of a FASTA file: library(ShortRead) fastadata - readFasta(fastafolder, fa$) file - tempfile() writeFasta(fastadata, file) var1 - readLines(file) while(countlength(tmp - readLines(file, n = -1)) 0) { #do something } I want the while loop to run till the end of file

[R] bigmatrix and irlba

2012-09-13 Thread federico ferreyra
Hello, good mornig, i have one questions, anybody know how to calculate svd of a matrix of the library bigmatrix with library irlba? thanks [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

[R] AICcmodavg

2012-09-13 Thread KerryGK
I am using the AICmodavg package and using R version 2.15.1. I need help with code that is instead being read as text. Below is a subset of code... I actually have 12 models, but I am trying to get this to work for 2 below right now. Everything 'appears' to work through the line starting with

Re: [R] help server slow

2012-09-13 Thread ldecola
help() seems the ONLY operation that's slow, Windows Task Manager doesn't show anything intensive going on, other programs running normally - it's as though a timer is set that diverts the request for a minute. links within the help pages come up quickly, only the requests from the console.

[R] Package for comparing sensitivity, specificity, PPV, NPV, and accuracy?

2012-09-13 Thread Gang Chen
Hi, I have two sets of sensitivity, specificity, positive predictive value, and negative predictive value, and accuracy from two tests on the same subjects. Is there an R package that does such paired comparisons? Thanks, Gang Chen __

Re: [R] help server slow

2012-09-13 Thread Jeff Newmiller
That sounds more like a networking lookup delay than R. You have not provided sessionInfo(), but it could be due to antivirus software if you are using Windows or Mac. --- Jeff NewmillerThe .

Re: [R] Zip a file

2012-09-13 Thread Berend Hasselman
On 13-09-2012, at 14:10, Rantony wrote: Hi, How to zip a csv file ? i tried with zipfile.ZipFile - but it showing function could not find. What exactly did you try? Is there have any other way to zip files without installing any package ? Have you tried ??zip or ?zip in R? Berend

Re: [R] package installation problem.

2012-09-13 Thread R. Michael Weylandt
Easiest answer would be to update to a more recent version of R: I'm not sure binaries are available for 2.10.z anymore. Cheers, M On Thu, Sep 13, 2012 at 12:35 PM, bokaha guy bokah...@yahoo.fr wrote: Dear friends from the R-community, I am djipie, bokaha and live in Germany. I am a student

Re: [R] Shading in prediction intervals

2012-09-13 Thread David Winsemius
On Sep 12, 2012, at 10:38 PM, Jonathan Zhang wrote: I have the following code for the minimum and maximum of my prediction interval y.down=lines(x[x.order], set1.pred[,2][x.order], col=109) y.up=lines(x[x.order], set1.pred[,3][x.order], col=109) You do not understand what the lines

Re: [R] package installation problem.

2012-09-13 Thread Uwe Ligges
On 13.09.2012 17:14, R. Michael Weylandt wrote: Easiest answer would be to update to a more recent version of R: I'm not sure binaries are available for 2.10.z anymore. R-2.10.x is no longer supported, but binaries that were built years ago for that version of R are still available on CRAN

Re: [R] fractional balanced design conjoint analysis

2012-09-13 Thread S Ellison
We would like to generate fractional design for a conjoint analysis. For example we would like to reduce 2x2x2x2x3 -- 12-16 profiles. package BHH2 includes routines for 2-level fractional factorials with specified generators. package FrF2 provides a different 2-level fractional factorial

Re: [R] AICcmodavg

2012-09-13 Thread David Winsemius
On Sep 13, 2012, at 5:52 AM, KerryGK wrote: I am using the AICmodavg package and using R version 2.15.1. I need help with code that is instead being read as text. Below is a subset of code... I actually have 12 models, but I am trying to get this to work for 2 below right now.

Re: [R] how to find end of a FASTA file

2012-09-13 Thread Martin Morgan
On 09/13/2012 04:19 AM, mail me wrote: Hi: I am trying to find end of a FASTA file: library(ShortRead) fastadata - readFasta(fastafolder, fa$) file - tempfile() writeFasta(fastadata, file) var1 - readLines(file) while(countlength(tmp - readLines(file, n = -1)) 0) { #do something } I want

Re: [R] fractional balanced design conjoint analysis

2012-09-13 Thread S Ellison
package BHH2 includes routines for 2-level fractional factorials with specified generators. package FrF2 provides a different 2-level fractional factorial design toolkit. Something tells me you won't get a balanced 2x2x2x2x3 fractional in 16 or fewer runs though. I think 18 is

[R] list of funtions

2012-09-13 Thread Jonathan Phillips
Hi, I have a function called fitMicroProtein which takes a value called form, this can be any integer from 0-38. In a larger function I'm making (it's called Newton), the first thing I want to do is construct a list of functions where form is already set. So in pseudocode fs[[1]](...) -

Re: [R] list of funtions

2012-09-13 Thread Uwe Ligges
On 13.09.2012 19:01, Jonathan Phillips wrote: Hi, I have a function called fitMicroProtein which takes a value called form, this can be any integer from 0-38. In a larger function I'm making (it's called Newton), the first thing I want to do is construct a list of functions where form is

[R] cannot read iso639 table

2012-09-13 Thread Sam Steingold
line 109 did not have 5 elements ... but it did! empty beginning of file ... but it's not! details: --8---cut here---start-8--- get.language.ISO.table - function () { socket - url(http://www.loc.gov/standards/iso639-2/ISO-639-2_utf-8.txt;,

[R] remove all terms with interaction factor in formula

2012-09-13 Thread Alexander Shenkin
Hi Folks, I'm trying to find a way to remove all terms in a formula that contain a particular interaction. For example, in the formula below, I'd like to remove all terms that contain the b:c interaction. attributes(terms( ~ a*b*c*d))$term.labels [1] a b c d a:b

Re: [R] remove all terms with interaction factor in formula

2012-09-13 Thread Bert Gunter
~ a*b*d + a*c*d -- Bert On Thu, Sep 13, 2012 at 10:49 AM, Alexander Shenkin ashen...@ufl.edu wrote: Hi Folks, I'm trying to find a way to remove all terms in a formula that contain a particular interaction. For example, in the formula below, I'd like to remove all terms that contain the b:c

Re: [R] AICcmodavg

2012-09-13 Thread David Winsemius
On Sep 13, 2012, at 9:00 AM, David Winsemius wrote: On Sep 13, 2012, at 5:52 AM, KerryGK wrote: I am using the AICmodavg package and using R version 2.15.1. I need help with code that is instead being read as text. Below is a subset of code... I actually have 12 models, but I am

[R] Cannot write a dataframe to xls or csv Windows 7

2012-09-13 Thread pmulonge
Hello, I have a similar issue , but in my case I am using Windows 7 i try the following command to write a dataframe to xls using the xlsReadWrite package or the write.csv function write.xls(DATA,'Reg_IDcleaned.xls') or I will write.csv replacin the suffix with .csv I get absolutely no error

[R] Paasing values to sqlQuery like SAS macro

2012-09-13 Thread ramoss
Hello, We lost our SAS licence I am busy transfering my old SAS programs to R environment. I am very new to R. In 1 program I was creating SAS macro vars passing them into a SQL query to run against the server. There are 3 variables firm, begindt, enddt. # of values for each varies month to

Re: [R] Zip a file

2012-09-13 Thread arun
HI, If you look ?zip(), the usage is: zip(zipfile, files, flags = -r9X, extras = , zip = Sys.getenv(R_ZIPCMD, zip)) A.K. - Original Message - From: Rantony antony.akk...@ge.com To: r-help@r-project.org Cc: Sent: Thursday, September 13, 2012 8:10 AM Subject: [R]

[R] Auomatic Download of climate netcdf4 files from the Climate Explorer Website

2012-09-13 Thread ucakmde
Dear R-helpers, I am trying to download some netcdf4 files from the Climate Explorer Website: http://climexp.knmi.nl/start.cgi?id=someone@somewhere In fact, there are 78 distinct files. I have found a way to download a particular file and open it in R, but I have been informed that there exists

[R] gee() and geeglm() errors

2012-09-13 Thread Lilia Verchinina
Dear R users, I have a question regarding the gee() (from package gee) and geeglm() (from package geepack). Here is the head() from my data: R head(compl.samples_long) UserID Intervention PHQ_base compl_bin Sex EFE Neuro depr0 subject time PHQ 1.1 1000416 2 2

Re: [R] Package for comparing sensitivity, specificity, PPV, NPV, and accuracy?

2012-09-13 Thread Frank Harrell
Watch out - these are all improper accuracy scoring rules, so statistics computed on them are likely to be misleading. Frank Gang Chen-4 wrote Hi, I have two sets of sensitivity, specificity, positive predictive value, and negative predictive value, and accuracy from two tests on the same

Re: [R] Constraining parameters using tag() in SUR model - ZELIG

2012-09-13 Thread Samantha Azzarello
Arne, Thanks for the help. Ill make sure to cite systemfit along with Zelig. I cannot see how to constrain parameters based on the manual when there is more than 2 eqs using the M Matrix. I have 10 eqns with 6 parameters each and need to constrain all 6 across the 10 equations. For example B1s

[R] Namespaces without packages?

2012-09-13 Thread Ray Griner
Dear R-help list - Here's my problem. I have some programs I want to share with other users in the department. I currently tell users to use source(/path/to/myfile.R) to include the program. If I understand correctly, this puts all the functions I wrote into the user's namespace. So if I

Re: [R] how to create a substraction matrix (subtract a row of every column from the same row in other columns)

2012-09-13 Thread arun
Hi, Try this: vec1-1:5 library(MCMCpack)  cbind(rep(0,4),xpnd(diff(combn(vec1,2)),4)) ## [,1] [,2] [,3] [,4] [,5] #[1,]    0    1    2    3    4 #[2,]    0    2    1    2    3 #[3,]    0    3    2    1    2 #[4,]    0    4    3    2    1 dat1-data.frame(difftype=

Re: [R] remove all terms with interaction factor in formula

2012-09-13 Thread David Winsemius
On Sep 13, 2012, at 11:00 AM, Bert Gunter wrote: ~ a*b*d + a*c*d That seemed pretty clear and obvious, but I started wondering how to tell the machine to do it. Here is another idea: grep(b:c, attr(terms(~a*b*c*d), term.labels ) ,invert=TRUE, value=TRUE) [1] a b c d a:b

Re: [R] remove all terms with interaction factor in formula

2012-09-13 Thread William Dunlap
Your method would not work for, e.g., a:d. You could look at the factors attribute of a terms object and select out those columns with non-zero entries for the variables in the interaction of interest. E.g., fm - attr(terms(~a*b*c*d), factors) fm a b c d a:b a:c b:c a:d b:d c:d a:b:c a:b:d

Re: [R] Parsing back to API strcuture

2012-09-13 Thread Eric Fail
Dear Jim, Thank you for your response I appreciate your effort! It is close, I must admit that. What I am looking for is an object that is identical to 'RAW.API,' or at least in the stricture (I guess i do not need the ,`Content-Type` = structure(c(text/html, utf-8), .Names = c(, charset)))

Re: [R] cannot read iso639 table

2012-09-13 Thread peter dalgaard
On Sep 13, 2012, at 19:42 , Sam Steingold wrote: line 109 did not have 5 elements ... but it did! empty beginning of file ... but it's not! details: --8---cut here---start-8--- get.language.ISO.table - function () { socket -

Re: [R] cannot read iso639 table

2012-09-13 Thread William Dunlap
On Windows with R-2.15.1 in a 1252 locale, I had to read (and toss) out the initial 3 bytes (the byte-order mark?) to make things work: socket - url(http://www.loc.gov/standards/iso639-2/ISO-639-2_utf-8.txt,open=r,encoding=utf-8;) readChar(socket, nchars=3, useBytes=TRUE) [1]  d -

[R] Cannot install package xlsx

2012-09-13 Thread ramoss
I get following error message: trying URL 'http://cran.stat.ucla.edu/bin/windows/contrib/2.15/xlsx_0.4.2.zip' Content type 'application/zip' length 365611 bytes (357 Kb) opened URL downloaded 357 Kb Error in read.dcf(file.path(pkgname, DESCRIPTION), c(Package, Type)) : cannot open the

[R] Missing Values

2012-09-13 Thread grond
I am using bootstrap and cannot figure how to tell R to ignore missing values (NA) I tried this syntax and it did not work. The name of the file is banks the column two. bootmean(banks$two,na.rm = True, conf = 90,nrep = 1000) -- View this message in context:

[R] split plot experiment with a repeated measure

2012-09-13 Thread Mike Palmer
Hello, I would like advice on if and how I might viably analyse this dataset: The experiment has 3 blocks with a three level main plot treatment, split to a two level treatment. In this case most parameters are also measured repeatedly at 1-3 monthly intervals. Ideally I would like to test the

Re: [R] cannot read iso639 table

2012-09-13 Thread Sam Steingold
* William Dunlap jqha...@gvopb.pbz [2012-09-13 19:50:21 +]: On Windows with R-2.15.1 in a 1252 locale, I had to read (and toss) out the initial 3 bytes (the byte-order mark?) to make things work: socket -

[R] Keeping R active when launching external application

2012-09-13 Thread Biuw, Martin
Hi, This may or may not be slightly off topic, but I'll stick my neck out... I want to launch an external application from R while retaining R as the active application window (with R console as the active R window). I'm using shell.exec() to sequentially open and evaluate the contents in all

[R] cforest and cforest_unbiased for testing and training datasets

2012-09-13 Thread dub2
Greetings, I am using cforest to predict age of fishes using several variables; as it is rather difficult to age fishes I would like to show that a small subset of fish (training dataset) can be aged, then using RF analysis, age can accurately be predicted to the remaining individuals not in the

Re: [R] help server slow

2012-09-13 Thread ldecola
ah...McAfee 'free' virus scan invited itself onto my computer a few weeks ago; when i removed it, help() is now it's old, fast self! sessionInfo() R version 2.11.1 (2010-05-31) x86_64-pc-mingw32 locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252

Re: [R] cannot read iso639 table

2012-09-13 Thread William Dunlap
It would be helpful if you showed your commands and printed outputs, copied directly from your R session, from the beginning to the end. I put the call to sessionInfo() in my message because it is probably relevant. It is nice to completely include the original email when responding to it so

Re: [R] Constraining parameters using tag() in SUR model - ZELIG

2012-09-13 Thread Arne Henningsen
On 13 September 2012 18:38, Samantha Azzarello samantha.azzare...@cmegroup.com wrote: Thanks for the help. Ill make sure to cite systemfit along with Zelig. :-) I cannot see how to constrain parameters based on the manual when there is more than 2 eqs using the M Matrix. I have 10 eqns

Re: [R] Cannot install package xlsx

2012-09-13 Thread Jeff Newmiller
looks like a corrupt file. try again, or try another server. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go...

Re: [R] Missing Values

2012-09-13 Thread Bert Gunter
True != TRUE ## All CAPS! -- Bert On Thu, Sep 13, 2012 at 12:41 PM, grond agel...@usgs.gov wrote: I am using bootstrap and cannot figure how to tell R to ignore missing values (NA) I tried this syntax and it did not work. The name of the file is banks the column two.

Re: [R] cannot read iso639 table

2012-09-13 Thread peter dalgaard
Pragmatically, one can zap the BOM from the output with language.ISO.table[1,1] - substring(language.ISO.table[1,1],2) and be gone with it. It would be nicer to zap the BOM before read.table, though. It does work for me with the below (notice that the BOM is a single character if you don't

Re: [R] Missing Values

2012-09-13 Thread Jeff Newmiller
Don't give it any. Instead of banks$two, use na.omit(banks$two). --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go...

[R] simulate from conditional distribution

2012-09-13 Thread li li
Dear all, Y, X are bivariate normal with all the parameters known. I would like to generate numbers from the distribution Y | X c where c is a constant. Does there exist an R function generating random numbers from such a distribution? Thank you very much.

Re: [R] Paasing values to sqlQuery like SAS macro

2012-09-13 Thread Thomas Lumley
On Fri, Sep 14, 2012 at 3:54 AM, ramoss ramine.mossad...@finra.org wrote: We lost our SAS licence I am busy transfering my old SAS programs to R environment. I am very new to R. In 1 program I was creating SAS macro vars passing them into a SQL query to run against the server. There are 3

Re: [R] simulate from conditional distribution

2012-09-13 Thread Thomas Lumley
On Fri, Sep 14, 2012 at 9:02 AM, li li hannah@gmail.com wrote: Dear all, Y, X are bivariate normal with all the parameters known. I would like to generate numbers from the distribution Y | X c where c is a constant. Does there exist an R function generating random

Re: [R] cannot read iso639 table

2012-09-13 Thread William Dunlap
Pragmatically, one can zap the BOM from the output with language.ISO.table[1,1] - substring(language.ISO.table[1,1],2) On Windows with locale Englist_United States.1252 my R-2.15.1 could not get that far: socket - url(http://www.loc.gov/standards/iso639-2/ISO-639-2_utf-8.txt;, +

Re: [R] Missing Values

2012-09-13 Thread Nordlund, Dan (DSHS/RDA)
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- project.org] On Behalf Of Jeff Newmiller Sent: Thursday, September 13, 2012 1:46 PM To: grond; r-help@r-project.org Subject: Re: [R] Missing Values Don't give it any. Instead of banks$two, use

Re: [R] Namespaces without packages?

2012-09-13 Thread R. Michael Weylandt
On Thu, Sep 13, 2012 at 6:44 PM, Ray Griner rgri...@sdac.harvard.edu wrote: Dear R-help list - Here's my problem. I have some programs I want to share with other users in the department. I currently tell users to use source(/path/to/myfile.R) to include the program. If I understand

Re: [R] Cannot write a dataframe to xls or csv Windows 7

2012-09-13 Thread R. Michael Weylandt
On Thu, Sep 13, 2012 at 4:05 PM, pmulonge resea...@namibia.pharmaccess.org wrote: Hello, I have a similar issue , but in my case I am using Windows 7 i try the following command to write a dataframe to xls using the xlsReadWrite package or the write.csv function

Re: [R] Cannot write a dataframe to xls or csv Windows 7

2012-09-13 Thread William Dunlap
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of R. Michael Weylandt Sent: Thursday, September 13, 2012 2:52 PM To: pmulonge Cc: r-help@r-project.org Subject: Re: [R] Cannot write a dataframe to xls or csv Windows 7 On

Re: [R] remove all terms with interaction factor in formula

2012-09-13 Thread David Winsemius
On Sep 13, 2012, at 11:53 AM, William Dunlap wrote: Your method would not work for, e.g., a:d. You could look at the factors attribute of a terms object and select out those columns with non-zero entries for the variables in the interaction of interest. E.g., fm - attr(terms(~a*b*c*d),

Re: [R] remove all terms with interaction factor in formula

2012-09-13 Thread William Dunlap
The fm[,c]==1 does not work correctly as the value 2 also means that the variable (the row) is in the term (the column). The 2 means that you don't need to apply the contrasts function to that variable in this term. Bill Dunlap Spotfire, TIBCO Software wdunlap tibco.com -Original

Re: [R] [newbie] aggregating table() results and simplifying code with loop

2012-09-13 Thread Rui Barradas
Hello, You would get more and better help if you were to break your problem into smaller sub-problems. I am not really sure if this is what you want but here it goes. inxList - function(DF, logcover, nYears){ f - function(x, n){ if(any(x)){ r - rle(x)

Re: [R] list of funtions

2012-09-13 Thread Jonathan Phillips
Yes, seen it, and it's obviously the wrong thing to do or I'd be getting the result I'm looking for. But I can't see the correct way of doing it. I.e. I can't see any way of setting each element of the list to a function with a different 'form' value without using some 'i' like variable in a

[R] Correlation between random effects in the package coxme

2012-09-13 Thread Vinicius Santos
Hello, Why the correlation between the random effects is negative? library(coxme) rats1 - coxme(Surv(time, status) ~ (1|litter), rats) random.effects(rats1)[[1]] #one value for each of the 50 litters print(rats1) rats2 - lmekin(time ~ (1|litter), rats) fixed.effects(rats2)

Re: [R] Paasing values to sqlQuery like SAS macro

2012-09-13 Thread ramoss
Thanks I was doing something similar in SAS. I was looping macro based on a dataset containing the values: data _null_; set summary2; mindat=put(datepart(mindate),date9.); min_date='mindat_'|| trim(left(_n_)); put mindate= mindat= min_date=; /*check values in log*/ call symput

Re: [R] Missing Values

2012-09-13 Thread Allen C Gellis
thank you for the help So will the entire syntax appear as bootmean(na.omit(banks$two),na.rm = TRUE, conf = 90,nrep = 1000) From: Jeff Newmiller jdnew...@dcn.davis.ca.us To: grond agel...@usgs.gov, r-help@r-project.org Date: 09/13/2012 04:46 PM Subject: Re: [R] Missing Values Don't give

[R] problem creating an array

2012-09-13 Thread Curtis Burkhalter
Hello, I am having trouble creating a (1000,3,201) array in R from a data set created within the same script. My problem is that I want to take a matrix that is 1000x603 (called landmat) and separate this into 201 separate (1000x3) matrices. My problem is when I try to do particular

[R] calculate within-day correlations

2012-09-13 Thread emorway
useRs, Here is some R-ready data for my question to follow. Of course this data is small snippet from a much larger dataset that is about a decade long. Q-read.table(textConnection(2002 3 28 15 77.38815 2002 3 28 30 77.09505 2002 3 28 45 76.80196 2002 3 28 60

Re: [R] Missing Values

2012-09-13 Thread grond
this worked bootmean(na.omit(Xt$Y), conf = 90,nrep = 1000) thanks From: Jeff Newmiller [via R] ml-node+s789695n4643072...@n4.nabble.com To: grond agel...@usgs.gov Date: 09/13/2012 04:48 PM Subject: Re: Missing Values Don't give it any. Instead of banks$two, use na.omit(banks$two).

Re: [R] Missing Values

2012-09-13 Thread grond
actually this is what worked bootmean(na.omit(X$Y), conf = 90,nrep = 1000) From: Nordlund, Dan (DSHS/RDA) [via R] ml-node+s789695n464308...@n4.nabble.com To: grond agel...@usgs.gov Date: 09/13/2012 05:43 PM Subject: Re: Missing Values -Original Message- From: [hidden email]

Re: [R] calculate within-day correlations

2012-09-13 Thread Joshua Ulrich
On Thu, Sep 13, 2012 at 7:35 PM, emorway emor...@usgs.gov wrote: useRs, Here is some R-ready data for my question to follow. Of course this data is small snippet from a much larger dataset that is about a decade long. snip data Q_use-data.frame(date=as.POSIXct(paste(Q[,1],-,Q[,2],-,Q[,3],

[R] Adding annotations to qplot from a data frame

2012-09-13 Thread Euan Reavie
I have the following data frame: algaedata = year DIV cellsperml 2001 BAC 72.808 2001 CHL 3.273 2002 BAC 14.002 2002 CYA 220.896 2002 UNI 464.699 2003 BAP 0 2003 BAC 1.782 2004 CYA 315.799 2005 UNI 222.532 2005 BAP 0.2 2005 CYA 163.627 2005 BAC 324.949 2006 CHL 1.636 2006 BAC 199.145 2007 CHL

[R] tcltk installation problem in R (Mac OS X version)

2012-09-13 Thread Nitin Bhardwaj
Hi all, I just installed R on my Mac OS X machine and wanted to installed tcl/tk. So, I installed tcl/tk from this page: http://cran.r-project.org/bin/macosx/tools/ It gets placed in /usr/local dir. and then I installed R. Next, in R, I set the TCL_LIBRARY variable by saying

Re: [R] calculate within-day correlations

2012-09-13 Thread Rui Barradas
Hello, Try the following. Q_use_2 - split(Q_use, as.Date(Q_use$date)) SC_use_2 - split(SC_use, as.Date(SC_use$date)) lapply(seq_along(Q_use_2), function(i) cor(Q_use_2[[i]]$Q, SC_use_2[[i]]$SC)) Hope this helps, Rui Barradas Em 14-09-2012 01:35, emorway escreveu: useRs, Here is some

Re: [R] problem creating an array

2012-09-13 Thread Rui Barradas
Hello, You don't need the loop, it can be done with one much simpler instruction. Since the number of rows is not important, the example uses a 10x603 matrix. x - matrix(seq_len(10*603), ncol = 603) y - array(x, dim = c(10, 3, 201)) # that's it # See the first two y[, , 1:2] Hope this helps,

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