Re: [R] changing date by +/- days

2012-10-30 Thread arun
Hi, Try this: dat1-structure(1243792800, class = c(POSIXct, POSIXt), tzone = GMT)  dat2-as.POSIXlt(dat1)  dat2$mday-dat2$mday-10  dat2 #[1] 2009-05-21 18:00:00 GMT A.K. - Original Message - From: chuck.01 charliethebrow...@gmail.com To: r-help@r-project.org Cc: Sent: Monday, October

Re: [R] Error unary operator

2012-10-30 Thread peter dalgaard
On Oct 30, 2012, at 05:34 , Jean Jang wrote: Hi R - listers, I am receiving an error. Does anyone know what this means? J This command: ggplot(subset(foo, Rayos != Rayos.NA), aes(x=HTL, y=DevelopIndex, colour=TotalEggs)) +geom_point() +geom_jitter() + facet_grid(Aeventexhumed ~

Re: [R] GTK_2.18.5-X11.pkg

2012-10-30 Thread Prof Brian Ripley
On 29/10/2012 19:39, Cory Lowe wrote: Does anyone know where I can download the GTK_2.18.5-X11.pkg? It has been removed from r.research.att.com/libs/ and I need it to use the RQDA package on my mac. Is there anyone who can direct me to someone who might have the file? Any help would be

Re: [R] Changing radii line type in radial plots

2012-10-30 Thread Peter Ehlers
On 2012-10-29 11:34, Bernie Wone wrote: ok got it to work, but my original question was, is it possible to set the radii or axes one line type and the circles another type (please see attached)? Thanks! That wasn't clear in your original request. But it's easy. To provide arguments for setting

[R] Put submatrices in an array

2012-10-30 Thread Haris Rhrlp
Dear R users, I have a Hadamard matrix 16x15 and i want to put 16x5 submatrices in an array put i have an error. A1-matrix(c(0,0,0,0,0,0,0,0,0,0,0,0,0,0,0, + 1,0,1,0,1,0,1,0,1,0,1,0,1,0,1, + 0,1,1,0,0,1,1,0,0,1,1,0,0,1,1, + 1,1,0,0,1,1,0,0,1,1,0,0,1,1,0, + 0,0,0,1,1,1,1,0,0,0,0,1,1,1,1, +

Re: [R] Put submatrices in an array

2012-10-30 Thread Pascal Oettli
Hello, According to your script, the dimension of AA should be 16x3x161051. Best Regards, Pascal Le 30/10/2012 16:30, Haris Rhrlp a écrit : Dear R users, I have a Hadamard matrix 16x15 and i want to put 16x5 submatrices in an array put i have an error.

Re: [R] Put submatrices in an array

2012-10-30 Thread Rolf Turner
(1) Think about what you are doing. (2) Try your ideas out with a *simple* example. For instance take A - matrix(1:50,ncol=5). Then create all possible submatrices consisting of 3 distinct columns of A. There won't be nearly so many of these as in your real example, so the resulting output is

[R] help with lme

2012-10-30 Thread Sylvia Opriessnig
Dear Madam or Sir I am writing you hoping, that you can help me with a problem concerning the output of regressions done with the function lme in R. I would need the standard deviations for intercepts and predictors, but in the output I can only find those for the intercepts. Could it be, that

[R] Named list of data.frames to data.frame with names

2012-10-30 Thread Mark Payne
Hi, I very frequently end up in a situation where I have a named list of data.frames that I wish to combine. e.g. l - list(A=data.frame(x=rnorm(5), y=rnorm(5)), B=data.frame(x=rnorm(3),y=rnorm(3)), C=data.frame(x=rnorm(4),y=rnorm(4)),

Re: [R] ensembleBMA pit function warnings

2012-10-30 Thread anna freni sterrantino
Hello Chris,  I 've found two other issues  with MAE and CRPS, giving warning  when running examples. I've the same issue on my data.  Hope that you could find some time to take a look here. Thank you Anna library(ensembleBMA) Loading required package: chron example(MAE) MAE  

Re: [R] help with lme

2012-10-30 Thread ONKELINX, Thierry
Dear Sylvia, R-sig-mixed-models is a better list for questions about mixed models. The summary gives you the standard error for the fixed effects. See the output in your mail. E.g. AGQ has a standard error of 0.044 Have a look at http://glmm.wikidot.com/faq, it covers some topics on mixed

[R] Fwd: [Rd] Retrieving data from aspx pages

2012-10-30 Thread R. Michael Weylandt
Moved to r-help. On Mon, Oct 29, 2012 at 8:11 PM, jose ramon mazaira jram...@gmail.com wrote: Hi. I'm trying to write an application to retrieve financial data (specially bonds data) from FINRA. The web page is served dynamically from an asp.net application:

Re: [R] List of arrays - problem with dimensions

2012-10-30 Thread Loukia Spineli
Imagine a list of two arrays. The first array is like a vector that contains ten 2x2 matrices. The second array contains two vectors of 2x2 matrices of length five and three, respectively. I run the code and it gives me what I want for the first array. However, it disappoints me for the second

Re: [R] [Rd] Retrieving data from aspx pages

2012-10-30 Thread R. Michael Weylandt
Sorry for the noise. PD said to keep this on R-devel. If this sparks any interest, send replies there. M On Tue, Oct 30, 2012 at 9:44 AM, R. Michael Weylandt michael.weyla...@gmail.com wrote: Moved to r-help. On Mon, Oct 29, 2012 at 8:11 PM, jose ramon mazaira jram...@gmail.com wrote: Hi.

Re: [R] How emulate the function 'order' without with the function 'sort' in R

2012-10-30 Thread Rui Barradas
Olá, Há um R-Help em português, aqui está enganado. O endereço é http://br.groups.yahoo.com/group/R_STAT/ Além disso aqui não fazemos trabalhos de casa. Boa sorte, Rui Barradas Em 29-10-2012 23:53, kamisama escreveu: Olá amigos tudo bem ? Espero que sim. Sou novo aqui e gostaria muito da

Re: [R] Named list of data.frames to data.frame with names

2012-10-30 Thread Rui Barradas
Hello, There's nothing inelegant in your solution, you're using vectorized instructions. But there's a bug. The argument to rep should be 'each', not 'times'. l2$name - rep(names(l), each=sapply(l,nrow)) Hope this helps, Rui Barradas Em 30-10-2012 08:16, Mark Payne escreveu: Hi, I very

[R] Checking for different hazard distributions in interval censored data

2012-10-30 Thread Asa Johannesen
Hi all! I have two survival data sets looking at similar effects in different settings. One data set is only right censored, but the other is interval censored. In the right censored data set, there is an effect of one factor that causes very different shapes in survival curves (and

[R] subtract a time period from a date

2012-10-30 Thread paladini
Hello everybody, how can I reduce e.g. 30 days from a date? When I do the following 2011-05-01 CEST -2011-04-01 CEST I get: Time difference of 30 days an thats fine. But when I try 2011-05-01 CEST - 30 I get nonsense. So how can I subtract some days, month or years from a date? thanking

Re: [R] Named list of data.frames to data.frame with names

2012-10-30 Thread Rui Barradas
Hello, You're right, sorry for the misleading post. It's even documented: |times||A |integer vector giving the (non-negative) number of times to repeat each element if of length |length(x)| As for a one liner, use within(). within(do.call(rbind, l), name - rep(names(l), times=sapply(l,

[R] error in lm

2012-10-30 Thread paola
Hi everybody I am trying to run the next code but I have the next problem Y1-cbind(score.sol, score.com.ext, score.pur) vol.lm-lm(Y1~1, data=vol14.df) library(MASS) stepAIC(vol.lm,~fsex+fjob+fage+fstudies,data=vol14.df) Start: AIC=504.83 Y1 ~ 1 Error in addterm.mlm(fit, scope$add, scale =

[R] Is there an lm() equivalent of panel.lmline()?

2012-10-30 Thread Alex van der Spek
panel.lmline returns intercept and slope of y ~ x subsetted to the combination of conditioning factors given to xyplot in lattice. for instance: xyplot(Xvalues ~ log(Qvalues)|Tfac, data = df7, panel = panel.lmline) I am looking to find the equivalent formulation for lm() proper. If I do this:

Re: [R] FW: replace repeated id in a pedigree list

2012-10-30 Thread Rui Barradas
Hello, Ok, try the following. fun - function(x, d, last){ new - last if(any(d)){ ii - which(d) for(i in ii){ new - new + 1 old - x$ID[i] x$ID[i] - new x$FA_ID[x$FA_ID == old] - new x$MO_ID[x$MO_ID == old] - new

Re: [R] subtract a time period from a date

2012-10-30 Thread Rui Barradas
Hello, I don't get it, this seems to work as expected. d - as.Date(2011-05-01 CEST) d - 30 [1] 2011-04-01 Hope this helps, Rui Barradas Em 30-10-2012 10:25, paladini escreveu: Hello everybody, how can I reduce e.g. 30 days from a date? When I do the following 2011-05-01 CEST -2011-04-01

Re: [R] subtract a time period from a date

2012-10-30 Thread PIKAL Petr
Hi -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- project.org] On Behalf Of paladini Sent: Tuesday, October 30, 2012 11:26 AM To: r-help@r-project.org Subject: [R] subtract a time period from a date Hello everybody, how can I reduce e.g. 30 days

Re: [R] subtract a time period from a date

2012-10-30 Thread arun
HI, Try this:  dat1-2011-05-01 CEST  dat2-as.POSIXlt(dat1) dat2$mday-dat2$mday-30 dat2 #[1] 2011-04-01 A.K. - Original Message - From: paladini palad...@beuth-hochschule.de To: r-help@r-project.org Cc: Sent: Tuesday, October 30, 2012 6:25 AM Subject: [R] subtract a time period from a

Re: [R] Error unary operator

2012-10-30 Thread John Kane
it looks like facet_grid(Aeventexhumed ~ Rayos) + geom_smooth(method=lm, fill=NA) + ylim(c(0, 7)) should read facet_grid(Aeventexhumed ~ Rayos) + geom_smooth(method=lm, fill=NA) + ylim(c(0, 7)) In ggplot the + must be on the preceding line. John Kane Kingston ON Canada

[R] print and execute functions in a package namespace

2012-10-30 Thread Michael Friendly
Let's say I have a package that consists of a set of functions, fig1(), fig2(), fig3() ..., each of which produces a plot, and perhaps some printed output, e.g., fig1 - function() plot(1:10) fig2 - function() plot(10:1) fig3 - function() {y-sample(1:10,10); plot(y); y} I'd like to produce a

[R] standard error for quantile

2012-10-30 Thread PIKAL Petr
Dear all I have a question about quantiles standard error, partly practical partly theoretical. I know that x-rlnorm(10, log(200), log(2)) quantile(x, c(.10,.5,.99)) computes quantiles but I would like to know if there is any function to find standard error (or any dispersion measure) of

Re: [R] Opening SAS file using read.sas7bdat() function in sas7bdat library.

2012-10-30 Thread Matt Shotwell
Thanks for the helpful comments from others. The KNOWNHOST variable lists the types of file that are known to work with the read.sas7bdat function. It's likely that most files written on Windows platforms will work, even if not listed in KNOWNHOST. If you're feeling experimental, you might just

Re: [R] print and execute functions in a package namespace

2012-10-30 Thread Hadley Wickham
But I need to work with the names of the figure functions instead, something like figlist - paste0(fig, 1:3) Are the functions exported or internal? # Use for internal functions pkg - asNamespace(mypackage) # Use for exported functions: pkg - package:mypackage # Find functions matching a

Re: [R] standard error for quantile

2012-10-30 Thread Bert Gunter
Petr: 1. Not an R question. 2. You want the distribution of order statistics. Search on that. It's basically binomial/beta. -- Bert On Tue, Oct 30, 2012 at 6:46 AM, PIKAL Petr petr.pi...@precheza.cz wrote: Dear all I have a question about quantiles standard error, partly practical partly

Re: [R] standard error for quantile

2012-10-30 Thread Roger Koenker
Petr, You can do: require(quantreg) summary(rq(x ~ 1, tau = c(.10,.50,.99)) url:www.econ.uiuc.edu/~rogerRoger Koenker emailrkoen...@uiuc.eduDepartment of Economics vox: 217-333-4558University of Illinois fax: 217-244-6678

[R] Isomorphic matrices

2012-10-30 Thread Haris Rhrlp
Dear R users,  I have 2 matrices dim(16x5) below and i want to write an algorithm that check the 2 matrices if they are isomorphic ones (Isomorphic matrices: if I change the rows or/and columns or/and zeros into 1 and 1 into zeros in a row(s) or column(s) are the 2 matrices identical). 0    0  

[R] Java Exception error while reading large data in R from DB using RJDBC.

2012-10-30 Thread aajit75
Dear List, Java Exception error while reading large data in R from DB using RJDBC. I am trying to read large data from DB table(Vectorwise), using RJDBC connection. I have tested the connection with small size data and was able to fetch DB tables using same connection(conn as in my code).

Re: [R] Creating dataframes with unique, sequential names

2012-10-30 Thread Bart Joosen
Take a look at ?assign Bart -- View this message in context: http://r.789695.n4.nabble.com/Creating-dataframes-with-unique-sequential-names-tp4647863p4647864.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org

[R] newbie: embeding seq in a list

2012-10-30 Thread Anser Chen
Suppose I want to create a structure containing the following values: 0.8,0.9,1.0,1.1,1.2 If I use env - list(0.8,0.9,1.0,1.1,1.2) then R returns env [[1]] [1] 0.8 [[2]] [1] 0.9 [[3]] [1] 1 [[4]] [1] 1.1 [[5]] [1] 1.2 But, if I try to 'save some key-strokes', and use env -

[R] Amelia imputation - column grouping

2012-10-30 Thread Elisa D'Arcangelo
Hi everybody, I am quite new to data imputation, but I would like to use the R package ' Amelia II: A Program for Missing Data '. However, its unclear to me how the input for amelia should look like: I have a data frame consisting of numerous coulmns, which represent different experimental

[R] create 3x2 panel boxplots

2012-10-30 Thread nikalk
Hi, I would like to create a trellis plot (3x2) of 6 individual box plots. It would look like this: (Created semi-manually) http://r.789695.n4.nabble.com/file/n4647878/Figure8.jpg What would be the most elegant way to do this? Thank you! -- View this message in context:

[R] help - extract data using column names

2012-10-30 Thread alex_123
hello , I am new user in R . I have datafile (class = data.frame) which has 825 columns with unique column name i want extract 200 selected column from datafile how can I do this? my datafile look like.. Mi RBN RBFnDB nX 3 2.6225979 0.53132756

Re: [R] export variable from bash to R

2012-10-30 Thread sophie
Hi Barry Thank you very much for your reply. I changed my scripts according to your suggestions - this is how they look now: #!/bin/bash VARIABLES=( a b c d ) for i in ${VARIABLES[@]}; do export VARIABLENAME=$i Rscript -e 'source(myscript.R)' done and in the R program, I used

[R] peer-reviewed (or not) publications on R

2012-10-30 Thread Paul Artes
Dear Friends, I'm contributing to a paper on a new R package for a clinical (medicine, ophthalmology) audience, and part of the mission is to encourage people who might be occasional users of Excel or SPSS, to become more familiar with R. I'd really appreciate any pointers to more recent papers

[R] map similarity spatial autocorrelation in R

2012-10-30 Thread politeness
Hi, I have two global raster maps, each of the same variable but from different sources. The values range from 0 to 5 in whole numbers. Is there a statistical test in R that can quantify the similarity of the spatial patterns (i.e., highs and lows)? Thanks, -- View this message in context:

[R] FW: replace repeated id in a pedigree list

2012-10-30 Thread Roberta Carriero
From: roberta...@hotmail.it To: smartpink...@yahoo.com Subject: RE: [R] replace repeated id in a pedigree list Date: Tue, 30 Oct 2012 09:51:50 +0100 You are right! I want to replace the second 6 with a new ID. For example I have id 6 which is repeated 2 times. In family 1 it appears one

[R] HELP!! how to remove 10% of data randomly in R

2012-10-30 Thread Eugenie
any can please tell me how to remove 10%,15%,25% and 50% of the data randomly by using R programme??? can anyone please show me the coding? do i need to install any package? -- View this message in context:

[R] HELP FOR COMPUTING ENVIRONMENTAL EFFICIENCY INDEX/ LUENBERGER INDEX

2012-10-30 Thread Wang Sonne Soazic Elise
Dear Members  I am Writing to you because I need help to compute the Malmquist Luenberger   index  with  R with my panel data of 10 central Africa countries from the year 1980 to 2008. I have three inputs and 2 outputs which one is undesirable (CO2) and the other (GDP for agriculture is the

Re: [R] newbie: embeding seq in a list

2012-10-30 Thread ONKELINX, Thierry
You first example is a list of 5 items, each item is a number The second example is a list with one item: a vector with 5 elements. You'll need c() to make a vector of the item to get the same result. all.equal(list(c(0.8,0.9,1.0,1.1,1.2)), list(seq(0.8, 1.2, by = 1.1))) ir. Thierry Onkelinx

[R] Data set BregFix in package flexmix

2012-10-30 Thread tudor
Dear list: I would like to recreate how the artificial data set BregFix was generated in package flexmix (thanks Bettina and Friedrich). The data set is thoroughly described in Grun and Leisch's Computational Statistics Data Analysis 51(11) :5247-5252 but references to the appropriate seed

Re: [R] newbie: embeding seq in a list

2012-10-30 Thread Jessica Streicher
s - seq(0.8, 1.2, by = 0.1) as.list(s) to get the first type of list from the sequence. On 30.10.2012, at 16:51, ONKELINX, Thierry wrote: You first example is a list of 5 items, each item is a number The second example is a list with one item: a vector with 5 elements. You'll need c() to

Re: [R] export variable from bash to R

2012-10-30 Thread Barry Rowlingson
On Tue, Oct 30, 2012 at 2:03 PM, sophie melanie.bi...@bluewin.ch wrote: Hi Barry Thank you very much for your reply. I changed my scripts according to your suggestions - this is how they look now: #!/bin/bash VARIABLES=( a b c d ) for i in ${VARIABLES[@]}; do export

Re: [R] HELP!! how to remove 10% of data randomly in R

2012-10-30 Thread R. Michael Weylandt
Nope, you can do it easily along the lines of dat[sample(NROW(dat), NROW(dat)*(1 - 0.1)),] But you need to spend the time understanding what all that does. Lots of important and powerful R ideas in that little bit. Michael On Tue, Oct 30, 2012 at 3:12 PM, Eugenie leemean...@hotmail.com wrote:

Re: [R] help - extract data using column names

2012-10-30 Thread jim holtman
Is this what you want: x - read.table(text = Mi RBN RBFnDB nX + 3 2.6225979 0.53132756 -0.80599902 -1.4471864 -0.5705269 + 10 0.4818746 -1.72143092 -2.19579027 2.0118824 -0.5705269 + 12 2.8519611 1.88298265 0.09614617 0.6282549 -0.5705269 +

Re: [R] error in lm

2012-10-30 Thread Greg Snow
First your response in the formula is a matrix which causes the lm function to return an object of type 'mlm' for multivariate linear model. Then when you run the stepAIC function it runs the addterm function which looks for a method(function) to add terms to mlm objects. However nobody has

Re: [R] peer-reviewed (or not) publications on R

2012-10-30 Thread R. Michael Weylandt
On Tue, Oct 30, 2012 at 2:22 PM, Paul Artes paul_h_ar...@yahoo.co.uk wrote: Dear Friends, I'm contributing to a paper on a new R package for a clinical (medicine, ophthalmology) audience, and part of the mission is to encourage people who might be occasional users of Excel or SPSS, to become

Re: [R] create 3x2 panel boxplots

2012-10-30 Thread R. Michael Weylandt
On Tue, Oct 30, 2012 at 3:08 PM, nikalk nik...@gmail.com wrote: Hi, I would like to create a trellis plot (3x2) of 6 individual box plots. It would look like this: (Created semi-manually) http://r.789695.n4.nabble.com/file/n4647878/Figure8.jpg What would be the most elegant way to do this?

Re: [R] help - extract data using column names

2012-10-30 Thread Jessica Streicher
A look at the tutorial might help here, but anyway: Say you have that dataframe down there with the name myData (you should use dput() to give us the data btw), then you can subset that by using myData[rows,columns], where left of the comma you define which rows you want, and right of the

Re: [R] Is there an lm() equivalent of panel.lmline()?

2012-10-30 Thread Greg Snow
You can use the lmList function in the nlme package to do several seperate regressions, or use a model that allows for multiple intercepts. Possibly Xvalues ~ 0 + log(Qvalues)*Tfac or Xvalues ~ 0 + Tfac + log(Qvalues):Tfac (assuming Tfac is a factor). On Tue, Oct 30, 2012 at 5:53 AM, Alex van

[R] rJava Out of Memory Error

2012-10-30 Thread scoyoc
I'm running XLConnect 0.2-1 that depends on rJava 0.9-3. I am only able to work with 2 workbooks before I get this error... SppRich = wb[SpeciesRichness] # This command calls an Excel spreadsheet Error: OutOfMemoryError (Java): GC overhead limit exceeded I have tried... rm(list = ls())

Re: [R] newbie: embeding seq in a list

2012-10-30 Thread Guillaume2883
Hello Just add c() collector as follows : env - list(c(0.8,0.9,1.0,1.1,1.2)) Cheers Guillaume -- View this message in context: http://r.789695.n4.nabble.com/Re-newbie-embeding-seq-in-a-list-tp4647884p4647896.html Sent from the R help mailing list archive at Nabble.com.

[R] RCurl - curlPerform - Time out?!?

2012-10-30 Thread Florian Umlauf (CRIE)
Hi, I am working with the RCurl package and I am using the curlPerform function for an soap-query. The problem is that the code is usually working well, but sometimes the connection gets lost. So I wrote a while-loop to repeat the query if anything might happened so that the same query runs

Re: [R] newbie: embeding seq in a list

2012-10-30 Thread David Carlson
Pass a vector to list() instead of individual values: env - list(c(0.8,0.9,1.0,1.1,1.2)) env [[1]] [1] 0.8 0.9 1.0 1.1 1.2 - David L Carlson Associate Professor of Anthropology Texas AM University College Station, TX 77840-4352 -Original Message-

Re: [R] help - extract data using column names

2012-10-30 Thread Bert Gunter
Please read the Introduction to R tutorial that ships with R to get started with R. Quoting Rolf Turner: Learn something about R; don't just hammer and hope. Read the introductory manuals and scan the FAQ. Cheers, Bert On Tue, Oct 30, 2012 at 7:09 AM, alex_123 deepak.j...@gmail.com wrote:

Re: [R] Creating dataframes with unique, sequential names

2012-10-30 Thread Greg Snow
On Tue, Oct 30, 2012 at 8:00 AM, Bart Joosen bartjoo...@hotmail.com wrote: Take a look at ?assign Then read fortune(236) Then learn about lists and environments to learn better methods. Bart, without context it is harder for use to contribute useful advice. Bart -- View this message

Re: [R] export variable from bash to R

2012-10-30 Thread sophie
Hi Barry, I already tried adding print commands, but even if I put the print command right under myscript - function(), there is no printed output in the shell... sophie -- View this message in context: http://r.789695.n4.nabble.com/export-variable-from-bash-to-R-tp4647749p4647897.html Sent

Re: [R] peer-reviewed (or not) publications on R

2012-10-30 Thread Bert Gunter
As usual, Google is your friend! Google on growth of R software. The first 2 hits are relevant, and there are others further down. -- Bert On Tue, Oct 30, 2012 at 9:05 AM, R. Michael Weylandt michael.weyla...@gmail.com wrote: On Tue, Oct 30, 2012 at 2:22 PM, Paul Artes

Re: [R] create 3x2 panel boxplots

2012-10-30 Thread Greg Snow
You mention trellis, so I will assume that you already know about the trellis graphics functions (in the lattice package). If you are creating all the plots from a single dataset using conditioning then you can just use the 'layout' argument to specify the 3x2 arrangement (note that this

Re: [R] export variable from bash to R

2012-10-30 Thread Barry Rowlingson
On Tue, Oct 30, 2012 at 4:34 PM, sophie melanie.bi...@bluewin.ch wrote: Hi Barry, I already tried adding print commands, but even if I put the print command right under myscript - function(), there is no printed output in the shell... If your script is just: myscript - function(){ #

Re: [R] Amelia imputation - column grouping

2012-10-30 Thread Jose Iparraguirre
Hi Elisa, Simply create a data frame with the columns you want to use and then run the amelia() function on that data frame. Say, you've creasted the data frame MyDF with the 3 columns you want amelia to perform the imputation. Then type a.out - amelia(MyDFl, m =M) (where M is the number of

Re: [R] error in lm

2012-10-30 Thread Greg Snow
For a single response variable tools like LASSO, LARS, ridge regression, elasticnet, model averageing, and other penalized methods (packages lasso2, lars, rms, elasticnet, MASS, BMA, and probably others implement these tools) are preferred to stepwise methods. I don't know if any of these have

Re: [R] create 3x2 panel boxplots

2012-10-30 Thread John Kane
I'm not sure it is the most elegant way but you can do this with ggplot2 You may have to install it, (install.packages(ggplot2) A very basis example: library(ggplot2) mydata - data.frame(aa = rep(letters[1:6], each = 11), bb = rep( c(x, y), 11), cc - rnorm(66)) p -

[R] issues with krige function

2012-10-30 Thread Adrienne Wootten
Greetings all, Ran into a strange problem with the krige function from geoR. The problem that I am having is that while the krige function seems to work well, the resulting predicted values are all NAs. Given the size of the datasets I am working with can't attach it, but I can provide snippets

Re: [R] standard error for quantile

2012-10-30 Thread Ted Harding
On 30-Oct-2012 13:46:17 PIKAL Petr wrote: Dear all I have a question about quantiles standard error, partly practical partly theoretical. I know that x-rlnorm(10, log(200), log(2)) quantile(x, c(.10,.5,.99)) computes quantiles but I would like to know if there is any function to

Re: [R] Creating dataframes with unique, sequential names

2012-10-30 Thread Bart Joosen
Damn, I didn't read that before but assign could get the job done if used wise, but without context it's hard to say, I must admit Date: Tue, 30 Oct 2012 10:50:40 -0600 Subject: Re: [R] Creating dataframes with unique, sequential names From: 538...@gmail.com To:

Re: [R] HELP!! how to remove 10% of data randomly in R

2012-10-30 Thread arun
Hi, Try this: dat1-read.table(text=   V1 V2 1 5 10 2 6  3 3 8  4 4 9 20 5 15 30 6 25 40 7 2  4 8 3  1 9 1  5 10 8 10 ,header=TRUE) dat1[sample(1:nrow(dat1), 0.50*nrow(dat1)),] #50% of data #   V1 V2 #4   9 20 #6  25 40 #8   3  1 #10  8 10 #9   1  5 dat1[-sample(1:nrow(dat1), 0.90*nrow(dat1)),]

[R] box() doesnt work

2012-10-30 Thread penguins
Hi, when plotting a graphic i find that the surrounding box disappears if I adjust the margins with par(mar=..). Ive tried reassigning it with box() but it doesnt seem to make any difference. Does anyone know a way to overcome this? Thanks in advance -- View this message in context:

[R] help with for loop: new column giving count of observation for each SITEID

2012-10-30 Thread Meredith, Christy S -FS
Hello, I think this is easy, but I can't seem to find a good way to do this in the R help. I have a list of sites, with multiple years of data for each site id. I want to create a new column that gives a number describing whether it is the 1st year (1 ) the data was collected for the site, the

Re: [R] export variable from bash to R

2012-10-30 Thread sophie
Hi Barry, OK, now I absolutely do feel like the newbie I am :-) I added the function call, and - what a surprise - everything is working fine. Thanks a lot, sophie -- View this message in context: http://r.789695.n4.nabble.com/export-variable-from-bash-to-R-tp4647749p4647912.html Sent from

Re: [R] Named list of data.frames to data.frame with names

2012-10-30 Thread arun
Hi, You can also try this:  res-do.call(rbind,lapply(l,function(x) data.frame(Name=names(l)[match.call()[[2]][[3]]],x)))  row.names(res)-1:nrow(res)  head(res) #  Name  x  y #1    A -0.7326214 -0.8871683 #2    A  0.4761960  0.8245219 #3    A  0.2362935 -0.1427997 #4    A 

Re: [R] peer-reviewed (or not) publications on R

2012-10-30 Thread Albyn Jones
More links on reproducible research: Opinion: Open and Free: Software and Scientific Reproducibility Seismological Research Letters Volume 83 · Number 5 · September/October 2012 Reproducible Research in Computational Science Roger D. Peng Science 2 December 2011: 1226-1227. albyn On

Re: [R] box() doesnt work

2012-10-30 Thread Jeff Newmiller
Not without reproducible code and data. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go...

[R] Swap rows and columns in a matrix

2012-10-30 Thread Haris Rhrlp
Dear R users, I want a help to write an algorithm for swapping rows and columns in a matrix thanks in advance [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

[R] mapply instead for loop

2012-10-30 Thread Omphalodes Verna
Hi all!   My question in about using mapply instead for loop. Below is a example with for loop: Is it posible to give same results with mapply function?   Thanks for help!   OV   x - 1:10 y - 1:10 xyz - data.frame(expand.grid(x,y)[1], expand.grid(x,y)[2], z = rnorm(100)) names(xyz) - c(x, y, z)

[R] boxplots of various levels

2012-10-30 Thread dysonsphere
noob here trying to make boxplots of some data i would like to separate the boxplots according to conditons of various levels for example: i have group:1 and 2, each group performed tests consisting of condition A,B,C,D side: left and right time: 1 to 10 I would like separate boxplots of the

Re: [R] Swap rows and columns in a matrix

2012-10-30 Thread Federman, Douglas
Does the builtin function 't' work for your needs? -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Haris Rhrlp Sent: Tuesday, October 30, 2012 3:00 PM To: R-help@r-project.org Subject: [R] Swap rows and columns in a matrix Dear R

Re: [R] help with for loop: new column giving count of observation for each SITEID

2012-10-30 Thread William Dunlap
Is this what you want? withinGroupIndex - function(group, ...) ave(integer(length(group)), group, ..., FUN=seq_along) site - c(A,A,C,D,C,A,B) data.frame(site, index=withinGroupIndex(site)) site index 1A 1 2A 2 3C 1 4D 1 5C 2 6A

Re: [R] Swap rows and columns in a matrix

2012-10-30 Thread Rolf Turner
On 31/10/12 07:59, Haris Rhrlp wrote: Dear R users, I want a help to write an algorithm for swapping rows and columns in a matrix thanks in advance ?t (???) cheers, Rolf Turner __ R-help@r-project.org mailing list

Re: [R] help with for loop: new column giving count of observation for each SITEID

2012-10-30 Thread Meredith, Christy S -FS
Not quite, I need it like this, a new number for each ordered year in the sequence within each site, regardless of what the years are, and to retain the RchID column. RchID siteyearindex 1 A 20021 2 A 20042 3 A 20053 4 B

Re: [R] rms plot.Predict question: swapping x- and y- axis for categorical predictors

2012-10-30 Thread Frank Harrell
The new version of rms is now on CRAN (for Mac and Windows probably tomorrow). You can now do p - Predict(...); plot(p, ~ x2, nlines=TRUE, type='p') to get what you want. Frank stephsus wrote Hi Frank, Thanks for your reply! Using p - Predict(f, x2); plot(p, ~x2, nlines=TRUE) makes a

Re: [R] help with for loop: new column giving count of observation for each SITEID

2012-10-30 Thread William Dunlap
Your data was, in R-readable format (from dput()) d - data.frame( RchID = 1:9, site = factor(c(A, A, A, B, B, B, C, C, C), levels = c(A, B, C)), year = c(2002L, 2004L, 2005L, 2003L, 2006L, 2008L, 2002L, 2003L, 2004L), index = c(1L, 2L, 3L, 1L,

Re: [R] help with for loop: new column giving count of observation for each SITEID

2012-10-30 Thread Bert Gunter
Care to tell us why you think you need such an index? I suspect you do not. Cheers, Bert On Tue, Oct 30, 2012 at 12:21 PM, Meredith, Christy S -FS csmered...@fs.fed.us wrote: Not quite, I need it like this, a new number for each ordered year in the sequence within each site, regardless of

Re: [R] help with for loop: new column giving count of observation for each SITEID

2012-10-30 Thread arun
HI, You can also use this:res-do.call(rbind,lapply(split(d,d$site),function(x) data.frame(x,newindex=1:nrow(x  rownames(res)-1:nrow(res)  res #  RchID site year index newindex #1 1    A 2002 1    1 #2 2    A 2004 2    2 #3 3    A 2005 3    3 #4 4    B

[R] NA-friendly operator

2012-10-30 Thread vincent guyader
Hi everyone, i'm looking for a NA-friendly operator I explain : vec-c(3,4,5,NA,1,NA,9,NA,1) vec[vec == 1] # NA 1 NA NA 1 I dont want the NA's : vec[vec == 1 ! is.na(vec)]# 1 1 is the same as vec[vec %in% 1] # 1 1 %in% is NA-friendly :) But if i want 2

Re: [R] NA-friendly operator

2012-10-30 Thread Sarah Goslee
Here's one option: vec-c(3,4,5,NA,1,NA,9,NA,1) subset(vec, vec 2) [1] 3 4 5 9 subset(vec, vec == 1) [1] 1 1 Sarah On Tue, Oct 30, 2012 at 5:08 PM, vincent guyader vincent.guya...@gmail.com wrote: Hi everyone, i'm looking for a NA-friendly operator I explain :

Re: [R] NA-friendly operator

2012-10-30 Thread Berend Hasselman
On 30-10-2012, at 22:08, vincent guyader wrote: Hi everyone, i'm looking for a NA-friendly operator I explain : vec-c(3,4,5,NA,1,NA,9,NA,1) vec[vec == 1] # NA 1 NA NA 1 I dont want the NA's : vec[vec == 1 ! is.na(vec)]# 1 1 is the same as

Re: [R] NA-friendly operator

2012-10-30 Thread David Winsemius
On Oct 30, 2012, at 2:25 PM, Berend Hasselman wrote: On 30-10-2012, at 22:08, vincent guyader wrote: Hi everyone, i'm looking for a NA-friendly operator I explain : vec-c(3,4,5,NA,1,NA,9,NA,1) vec[vec == 1] # NA 1 NA NA 1 I dont want the NA's : vec[vec

Re: [R] NA-friendly operator

2012-10-30 Thread William Dunlap
Instead of ignore-NA versions of , , ==, etc., I prefer to factor out the ignore-NA part of things: is.true - function(x) !is.na(x) x is.false - function(x) !is.na(x) !x used as is.false(c(1,2,NA,4) 3) [1] TRUE TRUE FALSE FALSE is.true(c(1,2,NA,4) 3) [1] FALSE FALSE

Re: [R] Σχετ: Swap rows and columns in a matrix

2012-10-30 Thread Rolf Turner
Unless there is a good reason not to, you should keep discussions on-list. On 31/10/12 08:29, Haris Rhrlp wrote: thank you for your answer but i dont want the transpose of matrix. I want to swap rows seperatly and columns the same Then I am afraid that your question is all Greek to me. :-)

Re: [R] help with for loop: new column giving count of observation for each SITEID

2012-10-30 Thread Bert Gunter
Eek! Just a bit simpler would be (á la Dr. Dunlap): (d is the data frame): d - within(d,index - ave(year,site, FUN = order)) (This assumes exactlly one data collection per each year that appears, though.) Cheers, Bert On Tue, Oct 30, 2012 at 12:56 PM, arun smartpink...@yahoo.com wrote: HI,

Re: [R] Swap rows and columns in a matrix

2012-10-30 Thread David Winsemius
On Oct 30, 2012, at 11:59 AM, Haris Rhrlp wrote: Dear R users, I want a help to write an algorithm for swapping rows and columns in a matrix This will shuffle columns, although 'randomly permute' is the more common word for this;operation: set.seed(123) mat[, sample(dim(mat)[2] ] This

[R] bootstrapping quantile regression

2012-10-30 Thread Kay Cichini
HI everyone, I try to get some bootstrap CIs for coefficients obtained by quantile regression. I have influencial values and thus switched to quantreg.. The data is clustered and within clusters the variance of my DV = 0.. Is this sensible for the below data? And what about the warnings? Thanks

Re: [R] RCurl - curlPerform - Time out?!?

2012-10-30 Thread Duncan Temple Lang
Hi Florian Yes, there are several options for a curl operation that control the timeout. The timeout option is the top-level general one. There is also timeout.ms. You can also control the timeout length for different parts of the operation/request such as via the connecttimeout for just

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