On Apr 26, 2013, at 14:48 , John Kane wrote:
I don't think so. read.csv is a striped down version of read.table. You
should be able to do this with the skip option there.
You can also pass skip= to read.csv, it just passes it on to read.table. But it
is not clear to me what is supposed to
At 03:27 27/04/2013, Qiang Yue wrote:
Hello, Dr. Viechtbauer.
I am trying to perform a meta-analyis on a group
of before-after studies using Metafor. I read
your webpage including your correspondence with
Dr. Dewey
(https://stat.ethz.ch/pipermail/r-help/2012-April/308946.html),
who also
Thanks Peter, I must have misread the read.csv help. I thought skip had been
dropped with a couple of other options.
John Kane
Kingston ON Canada
-Original Message-
From: pda...@gmail.com
Sent: Sat, 27 Apr 2013 09:48:22 +0200
To: jrkrid...@inbox.com
Subject: Re: [R] csv file with
Dear Pavel Michna [maintainer of the package] (and copy to R-help
Mailing List)
When I try to load the package RNetCDF (after install from CRAN) I get
this message:
library(RNetCDF,
lib.loc=/Library/Frameworks/R.framework/Versions/3.0/Resources/library)
Error : .onLoad a échoué dans
But it is not clear to
me what is supposed to happen with the the double header, or what the file
format in
question is exactly.
I've seen double headers in which the first line gives the names of the
variables
and the second their units. E.g.,
And I've read them with the 2-calls-to-read.table trick you mentioned
hd - read.csv(..., nrows=2)
df - read.csv(..., skip=2, header=FALSE)
names(df) - ... some operation on hd ...
(or 3 calls, when I wanted to paste the units onto the variable name.)
Or with
Dear colleagues,
This is to inform you that Version 1.3.1 of the R package apcluster has
been released on CRAN. We did a major improvement of heatmap and
dendrogram plotting, as well as several minor improvements of the
package. For more details, see the following URLs:
On 26.04.2013 13:58, Jonathan Jansson wrote:
Hi! I am trying to make a stepwise regression in the multivariate case, using
Wilks' Lambda test.
I've tried this:
greedy.wilks(cbind(Y1,Y2) ~ . , data=my.data )
But it only returns:
Error in model.frame.default(formula = X[, j] ~ grouping,
Hey all,
I'm performing polynomial regression. I'm simulating x values using runif() and
y values using a deterministic function of x and rnorm().
When I perform polynomial regression like this:
fit_poly - lm(y ~ poly(x,11,raw = TRUE))
I get some NA coefficients. I think this is due to the
I believe it was already mentioned, but I can recommend the LaF package
(not completely impartial being the maintainer of LaF ;-)
However, the speed differences between packages will not be very large.
Eventually all packages will have to read in 6 GB of data and convert
the text data to
On 26.04.2013 19:15, Pramod Anugu wrote:
I am trying to install the package boss but i am getting error below:
Please advice
Well, it says
configure: error: netcdf header netcdf.h not found
so perhaps you do not have the netcdf headers installed?
Best,
Uwe Ligges
I once had a discussion with an economist who told me
in almost these exact words:
I don't care what the data say, the theory is so clear.
albyn
On 2013-04-26 9:30, William Dunlap wrote:
The prior for the incompetence/malice question is usually best set
pretty heavily in
favour of
On 27/04/2013 14:40, Marc Girondot wrote:
Dear Pavel Michna [maintainer of the package] (and copy to R-help
Mailing List)
When I try to load the package RNetCDF (after install from CRAN) I get
this message:
library(RNetCDF,
Pretty scary...
On Sat, Apr 27, 2013 at 12:28 PM, Albyn Jones jo...@reed.edu wrote:
I once had a discussion with an economist who told me
in almost these exact words:
I don't care what the data say, the theory is so clear.
albyn
On 2013-04-26 9:30, William Dunlap wrote:
The prior for
On 25.04.2013 18:12, tonitogomez wrote:
Hi Bill,
Very clear response.
How about when the missing values are on the response variable being
predicted (y)? That is, the model is fitted only to complete cases, but then
I want to have predictions for all individual y (including those missing).
Can
Inline.
-- Bert
On Sat, Apr 27, 2013 at 8:48 AM, Lucas Holland hollandlu...@gmail.com wrote:
Hey all,
I'm performing polynomial regression. I'm simulating x values using runif()
and y values using a deterministic function of x and rnorm().
When I perform polynomial regression like this:
Hi Lucas,
You may find some of these examples useful (towards the end):
http://elkhartgroup.com/rmodels.php
For example in your case you could be using b splines instead of an 11th
order polynomial, or use thin plate regression splines from the mgcv
package. I will also humbly suggest that
Hi, Tenfei, I have two group of data composed of gene mutation and deletion on
specific sites. Will it be possible for me to use the Manhattan Plot for
comparison? Thank you for you attention! Li-Wu Guo, Ph.D.
Sent from Windows Mail
[[alternative HTML version deleted]]
Dear Sir,
Yes, I want to generate the data by two Gaussian but mean from one of them
generatated from polar its coordinates. I am confused about the algorithm? I
know how to generate two Gaussian data with certain meancovariance matrix
using mvnorm but what about mean from its polar
https://github.com/hadley/devtools/wiki/Reproducibility
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example
It is not clear what you want. Do you need to generate the data or do
something with existing data?
John Kane
Kingston ON Canada
-Original
On Apr 26, 8:17 pm, David Winsemius dwinsem...@comcast.net wrote:
On Apr 25, 2013, at 6:35 PM, analys...@hotmail.com wrote:
Is there a way to use read.csv() on such a file without deleting one
of the header rows?
What do you mean by one of the header rows?
--
David Winsemius
Alameda,
Hello, Michael.
Thanks for your kind and rapid reply, and sorry for the inconvenience of
characters.
Yes, the primary studies reported the n, the mean percentage change and its
standard deviation, but some did not report the original value of before- or
after-intervention, and there is only
Maurice Allais (1988 Nobel Laureate in Economics) once said something to
the effect that economics can never be a science because it involves
self-interest. *
* It has been said that Euclid's theorem would have been bitterly
contested had its implications brought financial or political
thank you all very much.
Kevin
On Sat, Apr 27, 2013 at 11:51 AM, Jan van der Laan rh...@eoos.dds.nlwrote:
I believe it was already mentioned, but I can recommend the LaF package
(not completely impartial being the maintainer of LaF ;-)
However, the speed differences between packages will
Hi-
I just upgraded R to 3.0.0 from 2.15.1 (which worked fine). When I started
trying to install updated versions of the libraries, I saw the following
error:
install.packages(lme4)
Installing package into 'c:/Docume~1/melissa/R/win-library/3.0'
(as 'lib' is unspecified)
Warning in
Hi
i want to recode Male =1 and female =2 in R
what is the syntax for same ?
thanks
Sameer
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the
i am getting the following error
Error in `contrasts-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) :
contrasts can be applied only to factors with 2 or more levels
can any on e suggest how torectify
[[alternative HTML version deleted]]
Hello,
I have a question and need your help urgently. I am new to R but want to learn
it.
I have several files in a folder which I have imported to R using :
temp = list.files(pattern=*.txt)
myfiles = lapply(temp, read.delim)
The resulting files are on the workspace stored as List[110]. So
Hello,
I have a question and need your help urgently. I am new to R but want to learn
it.
I have several files in a folder which I have imported to R using :
temp = list.files(pattern=*.txt)
myfiles = lapply(temp, read.delim)
The resulting files are on the workspace stored as List[110]. So
On Sat, Apr 27, 2013 at 3:08 PM, Melissa Key mkche...@mac.com wrote:
Hi-
I just upgraded R to 3.0.0 from 2.15.1 (which worked fine). When I started
trying to install updated versions of the libraries, I saw the following
error:
install.packages(lme4)
Installing package into
HI,
Find 'T','C','A','F' and 'Y', delete them from all the 110 files
I assume that you meant to replace it with NA.
set.seed(28)
myfiles- lapply(1:5,function(i)
as.data.frame(matrix(sample(c(LETTERS,-999.99M),40*i,replace=TRUE),ncol=(40*i)/8),stringsAsFactors=FALSE))
myfiles[[1]]
# V1 V2
Hello,
You should provide us with a data example.
In the following, the two solutions are completely different but both of
them do what you want. Note that the second creates a factor variable,
whose levels are coded as integers. See R-intro.pdf in your doc
directory, chapter 4 Ordered and
Just because it is possible to make a plot, doesn't mean it's a good idea.
It would depend on what you're trying to show. -- H
On 27 April 2013 17:21, lw...@yahoo.com lw...@yahoo.com wrote:
Hi, Tenfei, I have two group of data composed of gene mutation and
deletion on specific sites. Will it
You didn't show an example of how to recreate your problem, but
this shows up when a term in a model is a factor (or character) variable
with no variation in it. E.g.,
d - data.frame(y=1:10, x1=rep(3,10), x2=rep(c(Female,Male),c(7,3)))
lm(y ~ x1 + x2, data=d, subset = x2==Female)
Error in
Hi all,
I have run a ridge regression as follows:
reg=lm.ridge(final$l~final$lag1+final$lag2+final$g+final$u,
lambda=seq(0,10,0.01))
Then I enter :
select(reg) and it returns: modified HKB estimator is 19.3409
modified L-W estimator is 36.18617
Using a reproducible example:
library(MASS)
fits - lm.ridge(y ~ ., longley, lambda=seq(0,.2,len=9))
whichIsBest - which.min(fits$GCV)
coef(fits)[whichIsBest,] # no need to refit
GNPUnemployed Armed.ForcesPopulation
Year
-1.454883e+03
Hi A.K,
Thanks for this great help. I wish to find -999.99M and replace with NA.
All others like T, A, F etc should be deleted from the files.
Thanks for much.
-- Original Message --
From : arun
To : Zilefac Elvis;
Cc : R help;
Sent : 27-04-2013
Hi,
If you wanted to delete T, C,A, F and Y and replace -999.99M with
NA, it is possible, but the result would be stored in a list if
the number of elements deleted from each of the columns are different. As you
didn't provide any reproducible example, I don't know whether equal number of
But there is almost certainly no need to do this in the first place!
-- Bert
On Sat, Apr 27, 2013 at 3:57 PM, Rui Barradas ruipbarra...@sapo.pt wrote:
Hello,
You should provide us with a data example.
In the following, the two solutions are completely different but both of
them do what you
What do you mean when you say deleted from the files? You are discussing
using space delimited files. What do you want to occupy the places where those
letters are?
---
Jeff NewmillerThe .
Hi Atem,
I was able to read the file and removed those suffix letters. The file had a
lot of formatting issues. I don't know about the formatting in your other
files. Also, there were lines that differ in the number of elements.
If it is similar to the one you send, you can try this:
On 04/27/2013 11:32 PM, triutami@gmail.com wrote:
Dear Sir,
Yes, I want to generate the data by two Gaussian but mean from one of them
generatated from polar its coordinates. I am confused about the algorithm? I know
how to generate two Gaussian data with certain meancovariance matrix
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