Re: [R] cannot load pbdMPI package after compilation

On 10/06/2013 03:17, Pascal Oettli wrote: Hello, I am not sure whether it helps you, but I was able to install it. OpenSUSE 12.3 R version 3.0.1 Patched (2013-06-09 r62918) pbdMPI version 0.1-6 gcc version 4.7.2 OpenMPI version 1.6.3 I didn't try with the most recent version of ompi (1.6.4).

[R] reshaping a data frame

Hi Guys I am trying to cast a data frame but not aggregate the rows for the same variable. here is a contrived example. **input** temp_df <- data.frame(names=c('foo','foo','foo'),variable=c('w','w','w'),value=c(34,65,12)) > temp_df names variable value 1 foow34 2 foow

Re: [R] Sending Email with Attachment

On Mon, 10 Jun 2013, "Bhupendrasinh Thakre" writes: > Thanks Rex for the help. So it seems that I might have to use Python or Perl > to perform the action. > On Windows, you may want to look at Blat ( http://www.blat.net/ ). You can easily use it from R scripts via 'system'. > > > -Origi

Re: [R] arima time series in R

Hi, library(forecast) ?Arima And if you don't know what "ar" and "ma" are, you probably should read some book before to go further. Regards, Pascal On 10/06/13 14:03, Aakanksha Dahiya01 wrote: It would be great help if someone just tell me what does ar1,ma1 and ma2 signify here.. how do I

[R] How to expand.grid with string elements (the half!)

I have the following result of expand grid: > d <- expand.grid(c("x","y","z"),c("x","y","z")) What I want is to create a combination of strings but only the half of the all combinations: Var1 Var2 1xx 2yx 3 yy 4 zy 5 xz 6zz What's the way to do it?

Re: [R] arima time series in R

It would be great help if someone just tell me what does ar1,ma1 and ma2 signify here.. how do I further predict from these coefficients.. -Original Message- From: Aakanksha Dahiya01 Sent: Monday, June 10, 2013 9:54 AM To: 'Prof Brian Ripley' Cc: r-help@r-project.org Subject: RE: [R] ari

[R] All against all correlation matrix with GGPLOT Facet

I have the following data: v <- rnorm(13) w <- rnorm(13) x <- rnorm(13) y <- rnorm(13) z <- rnorm(13) Using GGPLOT facet, what I want to do is to create a 5*5 matrix, where each cells plot the correlation between each pair of the above data. E.g. v-v,v-w; v-x,...,z-z What's the way to do it? A

Re: [R] Loop through variables and estimate effects on several outcomes

Hi, I assume this is what you wanted: #Your code library(gamair) data(chicago)  library(mgcv) library(splines) chicago1<- chicago chicago1$date<- seq(from=as.Date("1987-01-01"),to=as.Date("2000-12-31"),length=5114) chicago1$trend<-seq(dim(chicago1)[1])  names(chicago1) [2] <-"pm10" names

Re: [R] Error Object Not Found

Hi, I think that they are loaded. Here is the response that I get: package ‘foreign’ successfully unpacked and MD5 sums checked -- View this message in context: http://r.789695.n4.nabble.com/Error-Object-Not-Found-tp4669041p4669100.html Sent from the R help mailing list archive at Nabble.

Re: [R] arima time series in R

I am just performing arima time series analysis here.. and package used is "forecast". I am just not able what is ar1,ma1 and ma2. -Original Message- From: Prof Brian Ripley [mailto:rip...@stats.ox.ac.uk] Sent: Friday, June 07, 2013 5:29 PM To: Aakanksha Dahiya01 Cc: r-help@r-project.o

Re: [R] Sending Email with Attachment

Thanks Rex for the help. So it seems that I might have to use Python or Perl to perform the action. -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of rex Sent: Sunday, June 09, 2013 10:27 PM To: r-help@r-project.org Subject: Re: [R]

Re: [R] Sending Email with Attachment

Bhupendrasinh Thakre [2013-06-09 20:03]: library("sendmailR") from <- "a...@outlook.com" to <- e...@gmail.com subject <- "Run at" mailControl = list(smtpServer="blu-m.hotmail.com") attachment <- "type_1.pdf" attachmentName <- "target_score.pdf" attachmentObject <- mime

[R] Sending Email with Attachment

Hi, I am trying to send an email through gmail or outlook from my Windows PC and finding trouble to send the email. The code which I am using is given below: Code : library("sendmailR") from <- "a...@outlook.com" to <- e...@gmail.com subject <- "Run at" mailCo

Re: [R] cannot load pbdMPI package after compilation

Hello, I am not sure whether it helps you, but I was able to install it. OpenSUSE 12.3 R version 3.0.1 Patched (2013-06-09 r62918) pbdMPI version 0.1-6 gcc version 4.7.2 OpenMPI version 1.6.3 I didn't try with the most recent version of ompi (1.6.4). Regards, Pascal On 07/06/13 21:42, Antoin

Re: [R] Using Lattice, LatticeExtra - Hide right and top axes in multipanel plots

Hi You had to references to strip The axis.line in the par settings removes the axis line Have made some slight changes to your code which may be of interest I keep the panel arguments last and so avoid duplication require(grid) xyplot(b~t|G,data=q2,groups=grp, type="l",

Re: [R] Using Lattice, LatticeExtra - Hide right and top axes in multipanel plots

I updated the code for the second example.. This time.. all the axes disappeared!! xyplot(b~t|G,data=q2,groups=grp,type="l",as.table=T, layout=c(3,1), par.settings=list(axis.line=list(col=0)), scales=list(x=list(rela='free',alternating=0),y=list(rela='free',alternating=0),col=1,tck=c(1,0)),

[R] Using Lattice, LatticeExtra - Hide right and top axes in multipanel plots

Dear Rxperts, How do I hide the top and right axes in multiple panel plots? A couple of examples are provided below.. Would highly appreciate appreciate your assistance.. #Example 1 library(latticeExtra) xyplot((1:200)/20 ~ (1:200)/20, type = c("p", "g"), scales = list(x = list(log = 2,alternating

Re: [R] It seams that fast99 function (sensitivity package) does not work out for norm distribution.

On Jun 9, 2013, at 4:08 PM, Marino David wrote: > The author has already gave the illustration and solution as well. > Is that supposed to mean that you emailed the author and got a private response? > Thanks. > > > > 2013/6/9 Uwe Ligges > >> >> >> On 08.06.2013 00:54, Marino David wrot

Re: [R] It seams that fast99 function (sensitivity package) does not work out for norm distribution.

The author has already gave the illustration and solution as well. Thanks. 2013/6/9 Uwe Ligges > > > On 08.06.2013 00:54, Marino David wrote: > >> Dear all mailing listers, >> >> Does Anyone have the same problem as mine when using the fast99 >> (extended-FAST method) to perform SA of model w

Re: [R] Coefficients paths - comparison of ridge, lasso and elastic net regression

Hi, beginner Do you have reproducible data? I think your question is more related to statistical learning theory than R. You may want to watch Prof.Hastie's webinar. http://www.stanford.edu/~hastie/lectures.htm On Wed, Jun 5, 2013 at 10:22 AM, beginner wrote: > I would like to compare models

Re: [R] Regression Tolerance Intervals - Dr. Young's Code

Uwe and Dennis - Thank you so much for your comments, tips and advice. The following reproducible code has worked and given me the desired results. Pradip ### Revised Code # setwd ("C:/RAPP") require ("tolerance") set.seed (100);x <- runif (200,0,10); y <-

Re: [R] Not sure this is something R could do but it feels like it should be.

On Jun 9, 2013, at 6:14 AM, Calum Polwart wrote: >>> Calum >>> >> Hi Calum, >> I can only answer from the perspective of someone who calculated >> doses of alcohol for experimental subjects many years ago. It was not >> possible to apply a linear function across the range due to a number >> of f

Re: [R] Fortunes nomination (was: colour coded dotchart)

Oh, Lord, give me strength, for I am about to read an R Help file! Give me insight, for I must parse the words of statisticians forced by "R CMD check" to follow the way of the Literate Programmer! And please, Oh Lord, give me the wisdom to recall these tribulations when I set foot upon that roa

Re: [R] import from Stata, get NA

On Jun 9, 2013, at 7:41 AM, Ulrike Pasda wrote: > Dear all, > I have troubles figuring out how to convert missing values from Stata > (treated as -1 and -2) into NAs in R. > To read in the dta file I use: data <- read.dta("data.dta") > > Is there an option to tell R to convert the -1 and -2 into

[R] import from Stata, get NA

Dear all, I have troubles figuring out how to convert missing values from Stata (treated as -1 and -2) into NAs in R. To read in the dta file I use: data <- read.dta("data.dta") Is there an option to tell R to convert the -1 and -2 into NAs ? Your help is appreciated. Thanks a lot in advance. Rik

Re: [R] Regression Tolerance Intervals - Dr. Young's Code

On 08.06.2013 05:17, Muhuri, Pradip (SAMHSA/CBHSQ) wrote: Hello, Below is a reproducible example to generate the output by using Dr. Young's R code on the above subject . As commented below, the issue is that part of the code (regtol.int and plottol) does not seem to work. I would apprec

Re: [R] segfault -- address 0x29, cause 'memory not mapped'

On 08.06.2013 15:38, mathias kuhnt wrote: Dear List, after a night of calculating, R says goodbye with a segmentation fault. *** caught segfault *** address 0x29, cause 'memory not mapped' In my functions I subsequently read in network files of about 20KB using the IGraph package. Admitted

Re: [R] It seams that fast99 function (sensitivity package) does not work out for norm distribution.

On 08.06.2013 00:54, Marino David wrote: Dear all mailing listers, Does Anyone have the same problem as mine when using the fast99 (extended-FAST method) to perform SA of model with norm distribution inputs? Why not ask the authors of the function? Best, Uwe Ligges See the simple example

Re: [R] Identifying breakpoints/inflection points?

Please quote the question you are answering and also send the answer to the original poster, not only to this *mailing list* the original poster may not be reading himself. Best, Uwe Ligges On 07.06.2013 09:08, dchristop wrote: You can try this: library(inflection) #you have to instsall pa

Re: [R] Package 'ChoiceModelR' - Xbetas.csv? Rbetas.csv? betadraws?

On 07.06.2013 21:25, Dimitri Liakhovitski wrote: Hope to get some clarity from the creators of a (wonderful) package ChoiceModelR. I am using the main function 'choicemodelr'. Since we do not know if these "creators" are reading the list, why not ask them directly? Best, Uwe Ligges Eve

Re: [R] Error Object Not Found

On 08.06.2013 21:35, Court wrote: Hello, I am having difficulty with a command. An error message pops up saying: Error: object 'RWGJ.wload' not found. I have installed the packages needed to run the analysis, and have saved them to my working directory. And have you actually loaded them?

Re: [R] multilevel binary and ordered regression models

Rune, Thanks a lot for pointing me to your ordinal package. It is wonderful, and I tried a random intercept model and it worked well except that probably there is something wrong with my data (size is big), I got some warning messages indicating that "In sqrt(diag(vc)[1:npar]) : NaNs produced." Th

Re: [R] How to read a .rar file in R

On 09/06/2013 11:58, Deb Midya wrote: Hi, Thanks in advance. May I request you to assist me for the following please. I am using R-3.0.1 on Windows. Is there any R package or R function to read a .rar file (file with an extension rar)? Use system() with however you unpack rar files on your

[R] How to read a .rar file in R

Hi,   Thanks in advance.   May I request you to assist me for the following please.   I am using R-3.0.1 on Windows.   Is there any R package or R function to read a .rar file (file with an extension rar)?   Once again, thank you very much for the time you have given.   Regards,   Deb [[al

Re: [R] Not sure this is something R could do but it feels like it should be.

Calum Hi Calum, I can only answer from the perspective of someone who calculated doses of alcohol for experimental subjects many years ago. It was not possible to apply a linear function across the range due to a number of factors. One is that BAC, which was the target value, is dependent upon t

Re: [R] generate simple function with pre-defined constants

Dear Bill, On Thu, Jun 6, 2013 at 5:36 PM, William Dunlap wrote: > Try the following: >generateABFunction <- function(a, b) { > force(a) > force(b) > function(x) a*x + b >} >f12 <- generateABFunction(1, 2) >f53 <- generateABFunction(5,6) >f12(10:12) # get 12

Re: [R] Fortunes nomination (was: colour coded dotchart)

On Sun, 9 Jun 2013, Duncan Murdoch wrote: On reading the help pages, Thanks, online on R-Forge now :-) Best, Z On 13-06-08 9:32 PM, Rolf Turner wrote: ... You need to get the hang of reading the online help. The information required is actually there in ?dotchart --- it's just tersely an

[R] Fortunes nomination (was: colour coded dotchart)

On reading the help pages, On 13-06-08 9:32 PM, Rolf Turner wrote: ... You need to get the hang of reading the online help. The information required is actually there in ?dotchart --- it's just tersely and obscurely expressed. A certain degree of optimism is required. You need to ***believe

Re: [R] Dyn.load of sharing object with GSL library

On 09/06/2013 08:27, moghadameh mirzai wrote: Dear R-list, I want to use shared library of gsl in R(2.15.1) on unix .I have a makefile such as Well, don't try to use a Makefile as you do not know what you are doing. Use Makevars instead. CC = gcc CFLAGS = -fPIC -O2 PKG_LIBS -lgsl -lgslcbl

[R] agnes() in package cluster on R 2.14.1 and R 3.0.1

Dear R users, I discovered something strange using the function agnes() of the cluster package on R 3.0.1 and on R 2.14.1. Indeed, the clusterings obtained are different whereas I ran exactly the same code. I quickly looked at the source code of the function and I discovered that there was an imp

[R] Dyn.load of sharing object with GSL library

Dear R-list, I want to use shared library of gsl in R(2.15.1) on unix .I have a makefile such as CC = gcc CFLAGS = -fPIC -O2 PKG_LIBS -lgsl -lgslcblas -lm -lpthread   OBJS_SPB = calc_spb.o k.o dk.o ddk.o     calc_spb.so : $(OBJS_SPB)     $(CC) -shared -o calc_spb.so $(LIBS) $(OBJS_SPB)   clea

Re: [R] Need help on window() function of the 'zoo' package

Hello, Actually, Dat_zoo is not a matrix, it is an object of classes "zooreg" and "zoo", with a dim attribute: class(Dat_zoo) dim(Dat_zoo) And the output of window() is of the same classes but without a dim attribute: wnd <- window(Dat_zoo, start = as.Date("2001-01-02")) class(wnd) dim(wnd

Re: [R] CGIwithR installation failure [SOLVED]

Prof Brian Ripley [2013-06-09 00:22]: On 09/06/2013 08:05, rex wrote: Typo. Actually, I downloaded 0.72. Later, I found 0.73 here: http://cran.r-project.org/src/contrib/Archive/CGIwithR/ But see http://cran.r-project.org/package=CGIwithR for the current host. I did; that's where I found th

Re: [R] CGIwithR installation failure

Prof Brian Ripley [2013-06-08 23:23]: On 08/06/2013 23:27, rex wrote: CGIwithR apparently is not available on CRAN for R 2.15.x, so I It is not hosted on CRAN. You should ask its maintainer (and package installation problems most often belong on the R-devel list). Actually it is, but not

Re: [R] CGIwithR installation failure [SOLVED]

On 09/06/2013 08:05, rex wrote: rex [2013-06-08 18:05]: CGIwithR apparently is not available on CRAN for R 2.15.x, so I downloaded the source (0.73) and tried: ~/Downloads$ R CMD INSTALL CGIwithR Typo. Actually, I downloaded 0.72. Later, I found 0.73 here: http://cran.r-project.org/src/con

Re: [R] CGIwithR installation failure [SOLVED]

rex [2013-06-08 18:05]: CGIwithR apparently is not available on CRAN for R 2.15.x, so I downloaded the source (0.73) and tried: ~/Downloads$ R CMD INSTALL CGIwithR Typo. Actually, I downloaded 0.72. Later, I found 0.73 here: http://cran.r-project.org/src/contrib/Archive/CGIwithR/ D/L 0.73