Re: [R] Subtracting elements of a vector from each other stepwise

2013-09-10 Thread arun
Hi, May be this also works:  dist(x) #   1  2  3 #2  2  #3  6  4   #4 12 10  6 as.matrix(dist(x)) #   1  2 3  4 #1  0  2 6 12 #2  2  0 4 10 #3  6  4 0  6 #4 12 10 6  0 which(dist(x)==min(dist(x))) #[1] 1 A.K. - Original Message - From: Ben Bolker bbol...@gmail.com To:

Re: [R] ifelse question (I'm not sure why this is working)...

2013-09-10 Thread David Winsemius
On Sep 10, 2013, at 12:40 PM, Jonathan Greenberg wrote: R-helpers: One of my intrepid students came up with a solution to a problem where they need to write a function that takes a vector x and a scalar d, and return the indices of the vector x where x %% d is equal to 0 (x is evenly

Re: [R] Subtracting elements of a vector from each other stepwise

2013-09-10 Thread Ben Bolker
On 13-09-10 06:24 PM, arun wrote: Hi, May be this also works: dist(x) # 1 2 3 #2 2 #3 6 4 #4 12 10 6 as.matrix(dist(x)) # 1 2 3 4 #1 0 2 6 12 #2 2 0 4 10 #3 6 4 0 6 #4 12 10 6 0 which(dist(x)==min(dist(x))) #[1] 1 A.K. Yes, but you need to set

[R] Problems to show X-labels when plotting small values

2013-09-10 Thread Charles Novaes de Santana
Dear all, I am following instructions of FAQ 7.2 ( http://cran.r-project.org/doc/FAQ/R-FAQ.html#How-can-I-create-rotated-axis-labels_003f) to create rotated labels in my plots, but I am facing some problems when plotting variables with small values (in my case, values between 0.001 and 0.007).

[R] Fitting Arima Model to Daily Time Series

2013-09-10 Thread Paul Bernal
Hello everyone, Hope everyone is doing great. I would like to know how to use the arima function in R to fit arima or arma models to daily data, that is, with period = 365, this taking into account the fact that I have 5 years worth of daily data (so 365 * 5 = my number of observations). All I

Re: [R] ifelse question (I'm not sure why this is working)...

2013-09-10 Thread Jim Lemon
On 09/11/2013 05:40 AM, Jonathan Greenberg wrote: R-helpers: One of my intrepid students came up with a solution to a problem where they need to write a function that takes a vector x and a scalar d, and return the indices of the vector x where x %% d is equal to 0 (x is evenly divisible by d).

[R] double.xmin really the smallest non-zero normalized floating-point number?

2013-09-10 Thread Marius Hofert
Hi, ?.Machine says that 'double.xmin' is 'the smallest non-zero normalized floating-point number'. On my machine, this is 2.225074e-308. However, 2.225074e-308 / 2 is 0 and smaller than 2.225074e-308, so double.xmin is not the smallest such number (?) Am I missing anything? Cheers, Marius

Re: [R] double.xmin really the smallest non-zero normalized floating-point number?

2013-09-10 Thread William Dunlap
'normalized' is key. A normalized double precision floating point number has 52 binary digits of precision and .Machine$double.eps/2 does not. E.g., bitsOfPrecision - function(x)max(which( x != x*(1+2^-(1:60 bitsOfPrecision(4) [1] 52 bitsOfPrecision(.Machine$double.xmin) [1] 52

Re: [R] Subtracting elements of a vector from each other stepwise

2013-09-10 Thread Ben Bolker
arun smartpink111 at yahoo.com writes: Hi, Not sure this is what you wanted:  sapply(seq_along(x), function(i) {x1- x[i]; x2- x[-i]; x3-x2[which.min(abs(x1-x2))];c(x1,x3)}) # [,1] [,2] [,3] [,4] #[1,]   17   19   23   29 #[2,]   19   17   19   23 A.K. It's a little inefficient

Re: [R] assigning the class of an object

2013-09-10 Thread Rolf Turner
On 09/11/13 09:16, peter dalgaard wrote: On Sep 10, 2013, at 22:56 , Rolf Turner wrote: On 09/11/13 07:54, Davis, Brian wrote: I'm sure this has been answered before but alas my googlefoo is not that strong. I have several .Rdata files with a single object in them. I need to set the class

Re: [R] assigning the class of an object

2013-09-10 Thread William Dunlap
You could use assign(name, newValue, envir=env) but I prefer env[[name]]-newValue since the env[[name]] works on either side of the assignment operator. E.g., env - new.env() # or environment() if you prefer to put things in the current environment objNames - load(Robject.RData, envir=env)

Re: [R] ggplot2 percentages of subpopulations

2013-09-10 Thread arun
Hi, Try: library(reshape2)  sample.dat1-ddply(sample.dat,.(pop),mutate, valueper=(value/sum(value))*100)  test-ggplot(sample.dat1, aes(x=response.category,y=valueper, group=pop))  test+geom_bar(stat='identity', position='dodge',aes(fill=pop)) A.K. - Original Message - From: Simon Kiss

[R] ifelse question (I'm not sure why this is working)...

2013-09-10 Thread Jonathan Greenberg
R-helpers: One of my intrepid students came up with a solution to a problem where they need to write a function that takes a vector x and a scalar d, and return the indices of the vector x where x %% d is equal to 0 (x is evenly divisible by d). I thought I had a good handle on the potential

[R] assigning the class of an object

2013-09-10 Thread Davis, Brian
I'm sure this has been answered before but alas my googlefoo is not that strong. I have several .Rdata files with a single object in them. I need to set the class of the object to myClass. Unfortunately, I don't know the name of the object beforehand. Obviously I could ls() and get the name

Re: [R] Subtracting elements of a vector from each other stepwise

2013-09-10 Thread arun
Hi, Not sure this is what you wanted:  sapply(seq_along(x), function(i) {x1- x[i]; x2- x[-i]; x3-x2[which.min(abs(x1-x2))];c(x1,x3)}) # [,1] [,2] [,3] [,4] #[1,]   17   19   23   29 #[2,]   19   17   19   23 A.K. - Original Message - From: Michael Budnick mbudnic...@snet.net To:

Re: [R] ggplot2 percentages of subpopulations

2013-09-10 Thread arun
Sorry, a mistake: library(plyr) #instead of library(reshape2) - Original Message - From: arun smartpink...@yahoo.com To: Simon Kiss sjk...@gmail.com Cc: R help r-help@r-project.org Sent: Tuesday, September 10, 2013 3:08 PM Subject: Re: [R] ggplot2 percentages of subpopulations Hi,

Re: [R] ggplot2 percentages of subpopulations

2013-09-10 Thread Rui Barradas
Hello, I believe you'll have to do some data aggregation first. The following will do it. dat2 - merge(sample.dat, aggregate(value ~ pop, data = sample.dat, FUN = sum), by = pop) dat2$value.x - dat2$value.x/dat2$value.y test-ggplot(dat2, aes(x=response.category,y=value.x, group=pop))

Re: [R] Hmisc binconf function value interpretation during narrow confidence intervals

2013-09-10 Thread Folkes, Michael
Thanks for your reply Pascal. The alpha argument in binconf() is probability of a type I error, so confidence coefficient = 1-alpha. Alternately, binom::binom.confint() is given the argument as confidence level. The 'exact' method in both functions gives results as expected. It's just odd for me

Re: [R] ifelse question (I'm not sure why this is working)...

2013-09-10 Thread William Dunlap
remainderFunction-function(x,d) { ifelse(x%%d==0,yes=return(which(x%%d==0)),no=return(NULL)) } remainderFunction(x=c(23:47),d=3) The above call returns c(2, 5, 8, 11, 14, 17, 20, 23), the value of (23:47)%%3. Note that remainderFunction(integer(0), 3) returns logical(0). The return()

[R] Function aovp in library lmPerm

2013-09-10 Thread John Kolassa
Dear Colleagues, I'm attempting to use the function aovp in library lmPerm, and am getting strange results. The package maintainer appears to be deceased, and I'm wondering if anyone else has experience with this package. I'm attempting a permutation test for a two-way analysis of

Re: [R] assigning the class of an object

2013-09-10 Thread Rolf Turner
On 09/11/13 07:54, Davis, Brian wrote: I'm sure this has been answered before but alas my googlefoo is not that strong. I have several .Rdata files with a single object in them. I need to set the class of the object to myClass. Unfortunately, I don't know the name of the object beforehand.

[R] Subtracting elements of a vector from each other stepwise

2013-09-10 Thread Michael Budnick
I am trying to figure out how to create a loop that will take the difference of each member of a vector from each other and also spit out which one has the least difference. I do not want the vector member to subtract from itself or it must be able to disregard the 0 obtained from subtracting

Re: [R] rgl snapshot on headless server

2013-09-10 Thread Duncan Murdoch
On 10/09/2013 10:58 AM, Andreas Maunz wrote: Hi all, I have a shiny app, in which I want to use rgl's snapshot function. I am running Xvfb on my server so that rgl works. I start my shiny app as follows: echo Checking for Xvfb... pgrep -U username Xvfb /dev/null 21 if [ $? -gt 0 ]; then

[R] computationaly singular error!

2013-09-10 Thread Rose
Hi there, I am trying to estimate the mlogit model. but I get the following error. Error in solve.default(H, g[!fixed]) : system is computationally singular: reciprocal condition number = 4.65795e-19 I have googled it and found out the collinearity between independent variables cause this

[R] Changing shapes of some Nodes

2013-09-10 Thread lpupp
Hi, I am using the igraph package to plot a network. I need most of the vertices to be green and circular. A few selected vertices I need to change to make them blue squares. I created this loop to color the necessary nodes blue but I dont know how to change their shapes: for(i in

Re: [R] Problems to show X-labels when plotting small values

2013-09-10 Thread Jim Lemon
On 09/11/2013 09:06 AM, Charles Novaes de Santana wrote: Dear all, I am following instructions of FAQ 7.2 ( http://cran.r-project.org/doc/FAQ/R-FAQ.html#How-can-I-create-rotated-axis-labels_003f) to create rotated labels in my plots, but I am facing some problems when plotting variables with

Re: [R] Daily average temperature from monthly average temperature

2013-09-10 Thread Pentti
Thank you very much for your help. Here in Scandinavia the annual average temperature profile looks very much like sin-function. So it's possible estimate the average daily values using monthly average values. The future data is climate change scenario data. Regards Pentti -- View this

Re: [R] RStudio Server init script

2013-09-10 Thread Bembi Prima
I have seen ?Startup and already update .RProfile in home folder, but as I already said it just affected user's Rprofile, not the global one. I might already find the solution for my problem. I just have to distribute one .Rprofile sscript to all user. That Rprofile will source files in a shared