Re: [R] eliminating white space in lattice plot

2014-01-20 Thread Gerrit Draisma
Thanks Duncan, I will have a look at the print command. Gerrit. op 1/18/2014 2:23 PM Duncan Mackay schreef: I forgot to mention for multiple plots ? print.trellis Duncan -Original Message- From: Gerrit Draisma [mailto:gdrai...@xs4all.nl] Sent: Saturday, 18 January 2014 21:49 To:

Re: [R] changing font size in Forest plot code.

2014-01-20 Thread Michael Dewey
At 21:13 19/01/2014, Gerard Smits wrote: Hi All, I have pulled the following function (fplot) from the internet, and unfortunately I do not see an author to whom I can give credit. It used grid graphics and relies mostly on package rmeta by Thomas Lumley. Dear Gerard Unless you are

[R] Grouping commands so that variablas are removed automatically - like functions

2014-01-20 Thread Rainer M Krug
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi I would like to group commands, so that after a group of commands has been executed, the variables defined in that group are automatically deleted. My reasoning: I have a longer sript which is used to load data, do analysis and plot graphs, all

Re: [R] Grouping commands so that variablas are removed automatically - like functions

2014-01-20 Thread jim holtman
Check out the use of the 'local' function: gc() used (Mb) gc trigger (Mb) max used (Mb) Ncells 199420 10.7 407500 21.8 35 18.7 Vcells 308004 2.4 786432 6.0 786424 6.0 result - local({ + a - rnorm(100) # big objects + b - rnorm(100) + mean(a + b)

[R] non-deletable varibles like in packages but during runtime?

2014-01-20 Thread Rainer M Krug
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi I have a script, in which I want to lock certain variables, so that they can not accidentally be deleted. I was thinking about a mechanism similar to packages, so that I can re-define the variable in a different namespace, but it is still

Re: [R] Grouping commands so that variablas are removed automatically - like functions

2014-01-20 Thread Rainer M Krug
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 01/20/14, 14:27 , jim holtman wrote: Check out the use of the 'local' function: True - have completely forgotten the local function. Thanks, Rainer gc() used (Mb) gc trigger (Mb) max used (Mb) Ncells 199420 10.7 407500 21.8 35

Re: [R] how to replace NA values

2014-01-20 Thread John Sorkin
I hope the code below will show you how to co what you want to do. John Elder1 - data.frame( ID=c(ID1,ID2,ID3,ID6,ID8), age=c(38,35,,NA,NA)) Elder1 # The age variable is a factor, we want it to be numeric class(Elder1[,'age']) # Convert factor to a numeric value.

[R] Reading SDMX Files in R

2014-01-20 Thread Lorenzo Isella
Dear All, I often need to access some data files which are available (also) as files in the SDMX format. For instance, this is the case of the OECD (http://www.oecd.org/) data. In order to automate some processes, I need to retrieve the SDMX data from a url and read the content into an R

[R] Setting up an R server.

2014-01-20 Thread John Sorkin
Can someone provide suggestions about how to best set up an R server? I would like to be able to run R on my IPad. It sounds like the only way to do this is to have the IPad access an R server. The server will be at my home, connected to the internet via my cable company (comcast). I don't yet

Re: [R] how to replace NA values

2014-01-20 Thread PIKAL Petr
Hi I believe that it is not what is wanted (if the OP knows exactly what he whants, which I doubt). your result is Elder1 ID age 1 ID1 3 2 ID2 2 3 ID3 1 4 ID6 0 5 ID8 0 however original output shall be Elder1$age[Elder1$age==]-NA Elder1$age-as.numeric(as.character(Elder1$age))

Re: [R] Setting up an R server.

2014-01-20 Thread R. Michael Weylandt
Perhaps http://www.rstudio.com/ide/docs/server/getting_started Michael On Mon, Jan 20, 2014 at 9:12 AM, John Sorkin jsor...@grecc.umaryland.edu wrote: Can someone provide suggestions about how to best set up an R server? I would like to be able to run R on my IPad. It sounds like the only way

[R] Select 5 identical numbers

2014-01-20 Thread Alaios
Dear all, I would like to select from a vector of 10 elements, 5 of those that are identical. How can I do that in R? I guess one way would be to taking random numbers and see if that appeared again. Is though there a more straightforward approach? Regards Alex [[alternative HTML

Re: [R] how to replace NA values

2014-01-20 Thread arun
I think this Elder1$age[Elder1$age==]-NA #is not needed  Elder1$age-as.numeric(as.character(Elder1$age)) #convert to NAs A.K. On Monday, January 20, 2014 9:53 AM, PIKAL Petr petr.pi...@precheza.cz wrote: Hi I believe that it is not what is wanted (if the OP knows exactly what he whants,

[R] Type III tests and Cox models

2014-01-20 Thread Terry Therneau
Someone asked a question about this on the list a couple months ago. I replied that I didn't know any sound basis for it, and the counter-reply was SAS has it. Grant applications were due and I got testy, so there was no further progress at that point. As the author of the survival package I

Re: [R] Select 5 identical numbers

2014-01-20 Thread jim holtman
Use 'table' to count the occurances and then select the one that has a count of 5. Jim Holtman Data Munger Guru What is the problem that you are trying to solve? Tell me what you want to do, not how you want to do it. On Mon, Jan 20, 2014 at 12:07 PM, Alaios ala...@yahoo.com wrote: Dear all,

Re: [R] Type III tests and Cox models

2014-01-20 Thread peter dalgaard
On 20 Jan 2014, at 18:47 , Terry Therneau thern...@mayo.edu wrote: The short summary: I was suspicious before, now I know for certain that it is misguided, and the phreg implementation of the idea is worse. A fortune candidate, if ever I saw one. -pd -- Peter Dalgaard, Professor, Center

Re: [R] Type III tests and Cox models

2014-01-20 Thread Hadley Wickham
To save others a little hunting, you can read the vignette online at http://cran.r-project.org/web/packages/survival/vignettes/tests.pdf Hadley On Mon, Jan 20, 2014 at 11:47 AM, Terry Therneau thern...@mayo.edu wrote: Someone asked a question about this on the list a couple months ago. I

Re: [R] Select 5 identical numbers

2014-01-20 Thread Bert Gunter
But just noting the usual floating point stuff, Jim's approach might run into problems depending on what you have as numbers and what is meant by identical. Cheers, Bert Bert Gunter Genentech Nonclinical Biostatistics (650) 467-7374 Data is not information. Information is not knowledge. And

Re: [R] Generating weights based on certain condition in the dataset

2014-01-20 Thread David Winsemius
On Jan 19, 2014, at 1:59 PM, Sudhi Upadhyaya wrote: Please delete this thread https://stat.ethz.ch/pipermail/r-help/2011-December/298414.html I already solved this problem and I forgot my login information so I am unable to login and delete this thread. Your password is automatically

Re: [R] Setting up an R server.

2014-01-20 Thread ce
I didn't try it myself but free Teamviewer software lets you access to any PC linux or windows from your ipad : http://www.teamviewer.com/ -Original Message- From: John Sorkin [jsor...@grecc.umaryland.edu] Date: 01/20/2014 09:13 AM To: r-help@r-project.org Subject: [R] Setting up an R

Re: [R] Type III tests and Cox models

2014-01-20 Thread Göran Broström
On 01/20/2014 07:02 PM, peter dalgaard wrote: On 20 Jan 2014, at 18:47 , Terry Therneau thern...@mayo.edu wrote: The short summary: I was suspicious before, now I know for certain that it is misguided, and the phreg implementation of the idea is worse. A fortune candidate, if ever I saw

Re: [R] Type III tests and Cox models

2014-01-20 Thread peter dalgaard
On 20 Jan 2014, at 23:05 , Göran Broström goran.brost...@umu.se wrote: On 01/20/2014 07:02 PM, peter dalgaard wrote: On 20 Jan 2014, at 18:47 , Terry Therneau thern...@mayo.edu wrote: The short summary: I was suspicious before, now I know for certain that it is misguided, and the phreg

Re: [R] Type III tests and Cox models

2014-01-20 Thread Terry Therneau
This last brought forth a good chuckle. Perhaps combine them into a single entry? On a serious note, to have someone of significant experience say that they hadn't heard of SAS's method for doing x, for nearly any x, marks a welcome climate change. (And took nearly that long.) The phreg

[R] lattice

2014-01-20 Thread Said Filahi
Bonjour, j'ai un programme dans lequel je veux coloré ou remplir les triangles dont les points sont significatifs (inférieur a 0.05). comment je peux le faire? merci [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

[R] Q: vcd - assocstats - scaling phi/phi max

2014-01-20 Thread bdano22
I am using assocstats() in the vcd library to calculate phi between pairs of dichotomous variables. vcd manual says it calculates the absolute value. How do I scale the resulting coefficient between 0 and 1, i.e. how does one calculate phi max? Or is it already scaled between 0 and 1 for

Re: [R] Q: vcd - assocstats - scaling phi/phi max

2014-01-20 Thread Jeff Newmiller
First off, it is rude to simultaneously post the same question on stackexchange and R-help. Don't do it. Second, posting using HTML is a good way to cause confusion in conveying your question clearly, since this mailing list strips it out. Please read the Posting Guide mentioned at the bottom

Re: [R] how to replace NA values

2014-01-20 Thread jwd
On Sun, 19 Jan 2014 11:39:43 -0800 (PST) kingsly ecoking...@yahoo.co.in wrote: Dear R community   I have a large data set contain some empty cells. Because of that, may be I am wrong, NA values are produced. Now I want replace both empty and NA values with zero. Elder1 - data.frame(  

Re: [R] Select 5 identical numbers

2014-01-20 Thread Alaios
Hi, I want from a vector containing has like 1000 elements to select X of it randomly but with never selecting the same element again. Each one should be unique element of the vector. Is this more precise now? Regards Alex On Monday, January 20, 2014 7:54 PM, Alaios ala...@yahoo.com wrote:

Re: [R] Select 5 identical numbers

2014-01-20 Thread Daniel Nordlund
read up on ?sample Dan Daniel Nordlund Bothell, WA USA -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Alaios Sent: Monday, January 20, 2014 10:12 PM To: Alaios; R-help@r-project.org Subject: Re: [R] Select 5 identical

[R] long vectors in R 3.0.x

2014-01-20 Thread km
Dear All, I understand that we could use long vectors like this beyond 2^31-1 limit. x- c('0') length(x)- 2^35 But how do I do introduce this notion in matrices ? specifically if i want rows 2^31-1 limit ? Regards, Krishna Mohan [[alternative HTML version deleted]]

Re: [R] long vectors in R 3.0.x

2014-01-20 Thread Prof Brian Ripley
On 21/01/2014 06:33, km wrote: Dear All, I understand that we could use long vectors like this beyond 2^31-1 limit. x- c('0') length(x)- 2^35 But how do I do introduce this notion in matrices ? specifically if i want rows 2^31-1 limit ? You read the documentation about the change, and if