Re: [R] [SPAM?] binding two lists of lists of dataframes together

2015-05-12 Thread Jim Lemon
Hi Vin, If I read your Output (Wanted) section correctly, you want a new list in which each element is the concatenation of the corresponding elements of the original two. If so, maybe this shorter example will help: list1-list(id=as.data.frame(matrix(rep(c(563,623,581),3),nrow=3,byrow=TRUE)),

Re: [R] binding two lists of lists of dataframes together

2015-05-12 Thread Vin Cheng
From: newrnew...@hotmail.com To: r-help@r-project.org Date: Mon, 11 May 2015 20:16:40 + Subject: [R] binding two lists of lists of dataframes together Hi, I'm new to R and am stumped. I'm trying to bind List 1 to List 2 and have the corresponding Output. I've found the

[R] Fw: Downloading R

2015-05-12 Thread e . robinson
My name is Erick Robinson and I am a SAS administrator at PNC Bank. I have been tasked with installing R on two of our SAS servers, but am having trouble downloading the source. I have little background in UNIX (our servers run On Solaris under Unix) and cannot get to the site to

[R] Error in title(...) : X11 font ....

2015-05-12 Thread Shi, Tao
Hi list, Could anybody help me to explain the following error message and fix it? Thank you very much! Tao sessionInfo() R version 3.1.2 (2014-10-31) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8

Re: [R] Downloading R

2015-05-12 Thread peter dalgaard
Downloading should be the easy bit. Just go to cran.r-project.org (or a mirror) and take the first link under source code for all platforms. However, you do need to study the R Installation and Administration manual, especially the platform notes. Solaris is a bit outside the mainstream these

Re: [R] species names on a RDA plot

2015-05-12 Thread Jari Oksanen
Antonio Silva aolinto.lst at gmail.com writes: Thanks for your attention Jim Following your idea of adding one more step to construct the diagram, I used text(spe2.rdaspe, row.names(spe2.rdaspe), pos=3, col=red,cex=0.8) and I could add species names. It seems that there's nothing

Re: [R] Code works on Mac but not Windows

2015-05-12 Thread Thierry Onkelinx
Dear Glenn, I think that you are confusing the signature of a method and the default values of of function. It looks like you want the signature(rates.data = character, method = character). But you are setting character as default value of both function arguments. Since you define a default value

Re: [R] Post-hoc tests on Split-plot design

2015-05-12 Thread Richard M. Heiberger
Yes, it is possible with the mmc function in the HH package. install.packages(HH) ## if you don't have it yet. library(HH) ?MMC Look at the maiz example, the long last example in ?MMC. When you are ready for followup questions, reply to this message to R-help (not directly to me and not to

[R] Problems getting Rcmdr running

2015-05-12 Thread Weiner, Michael
I have been asked by a couple researchers to install Rcmdr on our HPC cluster. The cluster is a CentOS 6.5 64-bit linux OS and I am having issues running Rcmdr on 3.2.0 (and other versions, but I fear the problem I am experiencing is affecting all the versions I have installed). I have done a

Re: [R] binding two lists of lists of dataframes together

2015-05-12 Thread Vin Cheng
Hi, Apologies for the newbie error. Thanks John, Jim, Jeff! Please find the dput output below. I'm trying to take list1 and list 2 and bind them together at an individual list level by column - all the structures and col names will be the same, but the number of rows could be different

Re: [R] ifelse and vs

2015-05-12 Thread nusrat ullah
Ip, g ftehgytreehjjjijiputv Sent from my iPadgypyrrytutytytfedewaqyŷiijj __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

[R] geom_text in ggplot (position)

2015-05-12 Thread AURORA GONZALEZ VIDAL
Hello everybody. I have an esthetic question. I have managed to create a stacked and grouped bar plot but I don't manage with putting the text in the middle of the bar plots. Do you know how to write the numbers in that position? Thank you so much. Example code: test  - data.frame(variables = 

[R] Post-hoc tests on Split-plot design

2015-05-12 Thread Md Newaz
Dear R-help, can you please post the following message to the r-nabble forum. Thanks! - Dear R users, I have been attempting to carry out post-hoc tests on a

Re: [R] binding two lists of lists of dataframes together

2015-05-12 Thread Vin Cheng
Hi, Apologies for the newbie error. Thanks John, Jim, Jeff! Please find the dput output below. I'm trying to take list1 and list 2 and bind them together at an individual list level by column - all the structures and col names will be the same, but the number of rows could be different for

Re: [R] geom_text in ggplot (position)

2015-05-12 Thread Ista Zahn
Well, the stacking makes it tricky. AFAIK you have to calculate the positions yourself, e.g., melted - melted[order(melted$variables, melted$cat, melted$cO), ] melted$rec2 - melted$recuento/2 melted[melted$cO == B, rec2] - melted[melted$cO == B, rec2] + melted[melted$cO == A, recuento]

Re: [R] help with by function

2015-05-12 Thread DIGHE, NILESH [AG/2362]
Jean: Thanks a lot!! The changes you made to the code gave me what I needed. I truly appreciate your time in correcting the code. Nilesh From: Adams, Jean [mailto:jvad...@usgs.gov] Sent: Tuesday, May 12, 2015 2:14 PM To: DIGHE, NILESH [AG/2362] Cc: r-help@r-project.org Subject: Re: [R] help

Re: [R] binding two lists of lists of dataframes together

2015-05-12 Thread David Winsemius
On May 12, 2015, at 9:24 AM, Vin Cheng wrote: list1-list(structure(list(id = c(493L, 564L, 147L, 83L, 33L, 276L, 402L, 285L, 30L, 555L), WgtBand = c(1, 1, 2, 3, 4, 5, 6, 7, 8, 9), Wgt = c(NaN, NaN, NA, NA, NA, NA, NA, NA, NA, NA)),

[R] help with by function

2015-05-12 Thread DIGHE, NILESH [AG/2362]
Hi, I have an anonymous function called function(x) that will run anova, run HSD.test on the model, and then sort the results. I am passing this anonymous function to the by function to get results by Isopair factor which is my index variable. Since I want to run the anova on multiple

Re: [R] help with by function

2015-05-12 Thread Adams, Jean
Nilesh, I found a couple errors in your code. First, in your by() statement you have a function to operate on the selected subset of data, which you refer to as x but then, in your aov statement you refer to data_set not x Second, your funC() statement is a function of

[R] Using Calipers in GenMatch and Match

2015-05-12 Thread Elan Swartz
Hi I have been reading the documentation, and it seems there is no difference in the caliper option in the packages genmatch and match. In both the simplistic way to use them is to specific a scalar which reflects the maximum number of standard deviations the control can be away from the treated.

Re: [R] binding two lists of lists of dataframes together

2015-05-12 Thread Vin Cheng
Hi, Thanks David! Your solution 3 worked well with the sample data, but when I run solution 2 3 on the actual data - it creates a list of 1 for each data point and it doesn't end up looking like the desired output for some reason. I've run a dput on the actual data and pasted below.

Re: [R] binding two lists of lists of dataframes together

2015-05-12 Thread David Winsemius
On May 12, 2015, at 12:56 PM, Vin Cheng wrote: Hi, Thanks David! Your solution 3 worked well with the sample data, but when I run solution 2 3 on the actual data - it creates a list of 1 for each data point and it doesn't end up looking like the desired output for some reason. I've

[R] Help on phylogenetic ANOVA functions

2015-05-12 Thread Guido Buezas
Hi everyone: I'm trying to do a phylogenetic ANOVA analysis, but i'm stuck with both possibilities: phylANOVA from phytools package, and aov.phylo from geiger package. Here is what i have Input data: CSV file with columns: Spp (categorical, for taxonomic species,, 29 species) Fam (categorical,

Re: [R] geom_text in ggplot (position)

2015-05-12 Thread Kristina Wolf
This may or may not be helpful, but you can create a dataframe with the geom_text exactly where you want it to be (although it will probably be a lot of extra work and will take time fiddling with it to see if you like how it looks - and I think it looks fine the way you have it already). Example

[R] Help with pedigree() function in kinship2

2015-05-12 Thread Jorge I Velez
Dear R-help, I am interested in plotting some pedigrees and came across the kinship2 package. What follows is an example of the pedigrees I am working with. Now, when running ## check package availability if(!require(kinship2)) install.packages('kinship2') require(kinship2) ## data to plot d

Re: [R] binding two lists of lists of dataframes together

2015-05-12 Thread Vin Cheng
Hi David, Would it be possible to modify it a little so that I can keep V1, V2, and V3 intact? I also don't quite know where to put list2 in the solution you provided below? list2 can be an exact copy of list1 for this example. list1 has (48 observations of 3 variables(V1, V2,V3)) each

Re: [R] binding two lists of lists of dataframes together

2015-05-12 Thread David Winsemius
On May 12, 2015, at 3:12 PM, Vin Cheng wrote: Hi David, Would it be possible to modify it a little so that I can keep V1, V2, and V3 intact? I also don't quite know where to put list2 in the solution you provided below? list2 can be an exact copy of list1 for this example. In

[R] MCMCglmm Intersex covariance set to 0

2015-05-12 Thread Rapkin, James
Dear all I'm trying to examine the effect that the additive genetic covariance (B) between the sexes has on the predicted response to selection on life-history traits in the sexes. Using the method of Argrawal and Stinchcombe (2009) this is done by calculating the response to selection

[R] Questions about permutation tests and error when using clusterCall (snow package)

2015-05-12 Thread Adam Zeilinger
Hello R help, I am trying to run a permutation (or randomization) test on a mixed effects model. The randomization is somewhat complex because I want to maintain the nested and unbalanced structure of the data. I am trying two different methods. The first is the PermTest() function in the

[R] Plotting times at night and getting plot limits correct

2015-05-12 Thread Bob O'Hara
I'm helping colleagues with analysis of frog calls at night, and they want to plot call statistics against time. This means we hit a problem: we want the x-axis to start at (say) 18:00 and end at (say) 06:00. I'm reluctant to use the date as well, because we have data from several dates, but only

[R] Urgent - Need help in segmentation using KCluster means

2015-05-12 Thread talktoneil2008
Urgent - Need help in segmentation using KCluster means. Please send me the analysis if someone can - talktoneil2...@ymail.com Data link (Droopbox) https://www.dropbox.com/s/kict2ezfokeyq7h/MAD_ZPR_User-Base_10K_Data_CONSOLIDATED%20_COPY2.xlsx?dl=0 -- View this message in context:

[R] Urgent - Need help in segmentation using KCluster means

2015-05-12 Thread talktoneil2008
Urgent - Need help in segmentation using KCluster means. Please send me the analysis if someone can - talktoneil2...@ymail.com Data link (Droopbox) https://www.dropbox.com/s/kict2ezfokeyq7h/MAD_ZPR_User-Base_10K_Data_CONSOLIDATED%20_COPY2.xlsx?dl=0 -- View this message in context:

Re: [R] Downloading R

2015-05-12 Thread e . robinson
Thanks Peter. Erick Robinson Software Engineer Lead Retail MIS SAS Support PNC Technology and Operations 23000 Mill Creek Blv. Hignland Hills, Oh 44122 440-342-3100 e.robin...@pnc.com From: peter dalgaard pda...@gmail.com To: e.robin...@pnc.com, Cc: R-help@r-project.org

Re: [R] Plotting times at night and getting plot limits correct

2015-05-12 Thread peter dalgaard
On 12 May 2015, at 16:34 , Bob O'Hara rni@gmail.com wrote: I'm helping colleagues with analysis of frog calls at night, What do you do during the daytime then? and they want to plot call statistics against time. This means we hit a problem: we want the x-axis to start at (say) 18:00

Re: [R] Plotting times at night and getting plot limits correct

2015-05-12 Thread Richard M. Heiberger
Try this. From the full data-time value subtract 18:00:00. This places the times you are interested in into the range 00:00:00 - 12:00:00 Remove the date from these adjusted date-time values and plot y against the new times. Take control of the tick-labels and display 18:00 - 0600 instead of the

Re: [R] Plotting times at night and getting plot limits correct

2015-05-12 Thread Thierry Onkelinx
Dear Bob, Is this useful? library(lubridate) library(ggplot2) n - 100 h - sample(c(18:23, 0:9), size = n, replace = TRUE) m - sample(0:59, size = n, replace = TRUE) d - sample(1:3, size = n, replace = TRUE) dataset - data.frame( Time = as.POSIXct(paste0(2015-01-, d, , h, :, m, :0)), Thing =