Re: [R] Can you get the DEFT from svyratio?

No, you can't (at the moment), though it shouldn't be too hard to extend. I can't run your example, though. I get: Error in eval(expr, envir, enclos) : object 'M' not found -thomas Thomas Lumley Professor of Biostatistics University of Auckland From: Chris

Re: [R] R XML package on RHEL

Hi Thanks for your reply. I do have them installed it seems: [dasneved@drdsv01zatcrh ~]$ yum list installed | grep xml2 *Note* Red Hat Network repositories are not listed below. You must run this command as root to access RHN repositories. libxml2.x86_64 2.7.6-21.el6_8.1

Re: [R] Help with Error Messages

Well, have you looked to see what: https://cran.r-project.org/web/views/Spatial.html has to offer? And, if so, why did you not follow their advice to post on the r-sig-geo list; if not, you should consider posting there rather than here. Cheers, Bert Bert Gunter "The trouble with having an

Re: [R] Can you get the DEFT from svyratio?

Whoops. I forgot to add the one line that I included later in the script. (I extracted the prior code from a longer document). The code should run now. It uses dplyr although this could have been done with alternative methods. How would you extend svyratio to included calculations for DEFT?

Re: [R] Can you get the DEFT from svyratio?

hi, your code isn't runnable at fpc= ~M + Nbar) On Wed, Dec 7, 2016 at 5:03 PM, Chris Webb wrote: > To Dr. Lumley or anyone who may know the answer, > > I am trying to obtain ratio estimates from Levy and Lemeshow's Sampling of > Populations 4th ed. page 281.

[R] Can you get the DEFT from svyratio?

To Dr. Lumley or anyone who may know the answer, I am trying to obtain ratio estimates from Levy and Lemeshow's Sampling of Populations 4th ed. page 281. The results in the book are from STATA. According to the STATA output, the DEFT is 0.830749 I can recreate all of the results except for DEFT.

Re: [R] how to randomly select the samples with different probabilities for different classes?

Hi Marna, If we assume a sample size of 1, something like this: dat[sample(which(dat$group!="C"),ceiling(14*0.4),TRUE),] dat[sample(which(dat$group=="C"),floor(14*0.6),TRUE),] Then just step through the two subsets to access your samples. One problem is that you will not get exactly 40 or 60 %,

Re: [R] R XML package on RHEL

I don't know, the only thing with ldap in the name that I have installed is "openldap". On Wed, Dec 7, 2016 at 2:21 PM, Das Neves, David, Vodacom South Africa wrote: > Hi > > Thanks for your reply. I do have them installed it seems: > > [dasneved@drdsv01zatcrh

Re: [R] MC_CORES and mc.cores for parallel package

On Wed, 7 Dec 2016, Marc Girondot via R-help wrote: Hi, From the documentation of ?options Options set in package parallel These will be set when package parallel (or its namespace) is loaded if not already set. mc.cores: a integer giving the maximum allowed number of additional R

Re: [R] R XML package on RHEL

As far as I know you only need libxml and libxml2-devel. Do you have those installed? --Ista On Wed, Dec 7, 2016 at 8:00 AM, Das Neves, David, Vodacom South Africa wrote: > Hi > > I am trying install the XML package on R 3.3.0 on RHEL. After it complained >

Re: [R] calculate correlations

hello Michael,I specified each column like this screenshot:(A.C1 means experiment A and first control,A.T3 means experiment A and third treatment  ) I have two transposed file,one for coding and one for lncoding. On Wednesday, December 7, 2016 6:11 PM, Michael Dewey

[R] Help with Error Messages

Hello everyone, I am new to R and need help with a project I am currently running. I am tracking about 24 great white sharks in Mossel Bay South Africa. I wish to summarize these sharks' movements in and around the bay. In order to do that I have a shapefile of a map that I wish to import into R

Re: [R] Polygon to raster with large data set

This sounds like a question better suited for R-sig-geo. -Don -- Don MacQueen Lawrence Livermore National Laboratory 7000 East Ave., L-627 Livermore, CA 94550 925-423-1062 On 12/6/16, 12:00 PM, "R-help on behalf of Vetter, Vanessa"

Re: [R] Help!

> On 07 Dec 2016, at 12:46 , Andrea Nygård Østvik wrote: > > Hi! > > > I have a problem with R studio running the whole script whenever I run one > seperate line at the time. It keeps on running the whole script over and over > and does not read the seperate line. I

Re: [R] Help!

This sounds like an RStudio interface problem, not an R programming problem, so a better place for help would be some resource provided by RStudio. That said, the phrase "does not read the separate line" suggests that maybe your script is not a plain text file, so you could check that, and make

Re: [R-es] rvest

Sí, la sugerencia es que mires el "xpath" que es la única dependencia que tiene tu código. Algo habrá cambiado en la página que está haciendo que ahora no te funcione. Saludos, Carlos Ortega www.qualityexcellence.es El 7 de diciembre de 2016, 0:39, escribió: >

Re: [R] Help!

Hi Andrea, The R-studio shortcut for running the current line or selection is Ctrl + Enter. The shortcut for sourcing the whole script is Ctrl+Shift+Enter If you press the 'source' button it will source the whole script - I believe there's a Run-button which will make you able to run the current

[R] R XML package on RHEL

Hi I am trying install the XML package on R 3.3.0 on RHEL. After it complained that the curl library was missing and we installed it, it continues to fail the linking step: gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -ldl -lpthread -lc -lrt -lcurl -lidn -lssh2 -lssh2 -lssl -lcrypto -lssl

[R] [R-pkgs] New R package on CRAN: productivity (0.1.0)

Dear R users, I am happy to announce that the R package 'productivity: Indices of Productivity Using Data Envelopment Analysis' is now available on CRAN (https://cran.r-project.org/package=productivity). Productivity allows computing various transitive measures of productivity and

[R] [R-pkgs] NIMBLE package for hierarchical modeling now on CRAN

NIMBLE version 0.6-2 has been released on CRAN and at r-nimble.org. NIMBLE is a system that allows you to: - Write general hierarchical statistical models in BUGS code and create a corresponding model object to use in R. - Build Markov chain Monte Carlo (MCMC), particle filters, Monte Carlo

[R] Help!

Hi! I have a problem with R studio running the whole script whenever I run one seperate line at the time. It keeps on running the whole script over and over and does not read the seperate line. I have exam tomorrow, please help!! ?Best Regards! [[alternative HTML version deleted]]

Re: [R] MC_CORES and mc.cores for parallel package

On Wed, Dec 7, 2016 at 7:04 AM, Jeff Newmiller wrote: > Your error is in thinking that environment variables are the same thing as > options. While environment variables might be used to set initial values of > certain options, options are completely separate from

Re: [R] MC_CORES and mc.cores for parallel package

Your error is in thinking that environment variables are the same thing as options. While environment variables might be used to set initial values of certain options, options are completely separate from environment variables. If you want to change the option on the fly, then change the

Re: [R] calculate correlations

If I understand this correctly you are choosing all the rows from each of cod and lnc which contain .c (ie any character followed by a C) and deleting the first column from each of cod and lnc. You then correlate them so that you get the correlation between corresponding columns of each. Since

[R] MC_CORES and mc.cores for parallel package

Hi, From the documentation of ?options Options set in package parallel These will be set when package parallel (or its namespace) is loaded if not already set. mc.cores: a integer giving the maximum allowed number of additional R processes allowed to be run in parallel to the current R

Re: [R] CONFUSSING WITH select[!miss] <- 1:sum(!miss)

Hi Jim, Rui and William; I do appreciate for your explanations and help. These are very helpful. Regards, Hayrettin On Tue, Dec 6, 2016 at 4:06 PM, Jim Lemon wrote: > Hi Greg, > What is happening is easy to see: > > ph<-matrix(sample(1:100,40),ncol=4) >

Re: [R] how to randomly select the samples with different probabilities for different classes?

Hello, If 60% of the 14 samples come from group C, then 8.4 samples should come from a group with 6 elements. Do you want sampling with replacement? If so maybe the following will do. perc <- c(0.4, 0.6) tmp <- split(seq_len(nrow(dat)), dat$group == "C") idx <- sapply(seq_along(tmp),

[R] how to randomly select the samples with different probabilities for different classes?

Hi R user, I have samples with covariates for different classes, I wanted to choose the samples of different groups with different probabilities. For example, I have a 22 samples size with 3 classes, groupA has 8 samples groupB has 8 samples groupC has 6 samples I want to select a total 14

[R] calculate correlations

Hi All,I have 11 human RNA-seq data (control/treatment),The effect of various drugs on various cancers,I want to calculate the genes-lncRna correlations for all tumors considered together for network,I did differential expression analysis and prepared normalized values (rpkm) of coding and