Re: [R] iterators : checkFunc with ireadLines

2020-05-20 Thread Jeff Newmiller
There is also apparently a package called disk.frame that you might consider. On May 19, 2020 12:07:38 AM PDT, Laurent Rhelp wrote: >Ok, thank you for the advice I will take some time to see in details >these packages. > > >Le 19/05/2020 à 05:44, Jeff Newmiller a écrit : >> Laurent... Bill is

Re: [R] [FORGED] Re: text annotation on Manhattn plot in qqman

2020-05-20 Thread Paul Murrell
Hi Something like this might do what you want ... ## From example(manhattan) manhattan(gwasResults, annotatePval = 0.0001) library(gridGraphics) grid.echo() ## grid.ls() ## The annotations have "text" in their name labels <- grid.grep("text", grep=TRUE) grid.edit(labels, gp=gpar(cex=1))

Re: [R] text annotation on Manhattn plot in qqman

2020-05-20 Thread Michael Dewey
Dear Ana That looks like something is hard coded in manhattan(). The simplest thing might be to contact the maintainer of the package and ask. You can make a copy of manhattan or textxy and modify them but I think the maintainer is the simplest course of action. Michael On 20/05/2020

Re: [R] text annotation on Manhattn plot in qqman

2020-05-20 Thread Ana Marija
HI Michael, Thank you so much! That worked!!! Now I am just trying to increase the size of text of SNP and GENE on plot I tried this: a$newname <- paste(a$SNP,"\n", a$GENE) manhattan(a, chr="CHR", bp="BP", snp="newname", p="P",cex = 0.5,annotatePval = 0.0001) but I am getting this error:

Re: [ESS] ess-eval-region Does Not Echo Highlighted Code Into the R Buffer?

2020-05-20 Thread Marc Schwartz via ESS-help
Hi Alex, Thanks for the clarification. Given that information, I found the related issue report on Github: https://github.com/emacs-ess/ESS/issues/998 reviewed the discussion there and ultimately, found the related commit. I have modified the value to 'nowait for now, which seems to be a

Re: [R-es] rmd y pdf

2020-05-20 Thread Jose Betancourt B.
Gracias con el siguiente comando no lograba cambios title: "Mi titulo" output: pdf_document fontsize: 11pt mainfont: Calibri El 19/5/20, Marcelino de la Cruz Rot escribió: > Hola José y Paco: > > El "problema" de codificar el  fontsize en el YAML es que está limitado > a 10, 11 o 12 pt. Para

Re: [R] text annotation on Manhattn plot in qqman

2020-05-20 Thread Michael Dewey
a$newname <- paste(a$SNP, a$GENE) manhattan(a, chr="CHR", bp="BP", snp="newname", p="P",annotatePval = 0.0001) However note that I do not use manhattan() so you may need to alter the parameters as I am assuming a is where it finds the remaining parameters. You may also need to play with the

Re: [R] iterators : checkFunc with ireadLines

2020-05-20 Thread Ivan Krylov
Hi Laurent, I am not saying this will work every time and I do recognise that this is very different from a more general solution that you had envisioned, but if you are on an UNIX-like system or have the relevant utilities installed and on the %PATH% on Windows, you can filter the input file