Re: [R] Count matrix of GSE146049

2023-04-02 Thread Bert Gunter
Go to Bioconductor.org -- Bert On Sun, Apr 2, 2023 at 9:38 AM Anas Jamshed wrote: > > How can I subscribe to R genomic list? > > On Sun, 2 Apr 2023, 9:28 pm Peter Langfelder, > wrote: > > > It's a microarray data set, so I don't think you would want to apply > > an RNA-seq pipeline. You'd be

Re: [R] Count matrix of GSE146049

2023-04-02 Thread Anas Jamshed
How can I subscribe to R genomic list? On Sun, 2 Apr 2023, 9:28 pm Peter Langfelder, wrote: > It's a microarray data set, so I don't think you would want to apply > an RNA-seq pipeline. You'd be better off applying a normalization > appropriate for this type of microarray data. > > HTH, > >

Re: [R] Count matrix of GSE146049

2023-04-02 Thread Peter Langfelder
It's a microarray data set, so I don't think you would want to apply an RNA-seq pipeline. You'd be better off applying a normalization appropriate for this type of microarray data. HTH, Peter On Sun, Apr 2, 2023 at 11:09 PM Anas Jamshed wrote: > > I want to get the count matrix of genes from >

Re: [R] Count matrix of GSE146049

2023-04-02 Thread Marc Girondot via R-help
Dear Anas Jamshed, This is a list for R, not for specific genomic question using R. You will have more chance to have answers using a genomic list. And when you ask question, it is better to not use abbreviation that only people from that field will understand: TMM ? Marc Le 02/04/2023 à

[R] Count matrix of GSE146049

2023-04-02 Thread Anas Jamshed
I want to get the count matrix of genes from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146049. Is it possible for GSE146049? After getting counts, I want to do TMM normalization. [[alternative HTML version deleted]] __