Don't try to integrate R with PHP, as you'll end up writing spaghetti code.
Use AJAX to send requests to the server with RApache scripts. OpenCPU will
do the job just fine, but make sure you use JSONP/CORS to bypass the same
origin policy. Long story short, it's something like this:
LAMP -AJAX- R
Hi guys,
AFAICT, this conversation now discusses some domain-specific issues.
However, in reply to OP and OQ, I'll shamelessly advertise the package that
Gergely Daróczi and I have released recently. It's named rapport, and you
can grab it from CRAN or GitHub (https://github.com/aL3xa/rapport/).
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