Re: [R] Running R under Sun Grid Engine with OpenMPI tight integration

2009-01-27 Thread Marce
2009/1/27 Rainer M Krug : > On Tue, Jan 27, 2009 at 2:30 AM, Peter Waltman > wrote: >> Hi - >> >> I saw your posting on the R-help mailing list. Were you ever able to get >> this working? did you end up switching to use the rsge library? > > Yes - that is exactly what I did - I am using rsge or

Re: [R] Problem about spawn nodes with Rmpi

2008-10-22 Thread Marce
2008/10/22 Markus Schmidberger <[EMAIL PROTECTED]> > > Hi Marce, > > there is a new mailing list for R and HPC: [EMAIL PROTECTED] > This is probably a better list for your question. > > Probably Rmpi does not find the correct Rmpi implementation. Have you > install

[R] Problem about spawn nodes with Rmpi

2008-10-22 Thread Marce
Hi all, now I'm testing R in a "virtual cluster", made it with VirtualBox. This one has 3 nodes, running CentOS 5 and OpenMPI 1.2.8, and the principal node (called "server") exports the /home to other nodes. I have installed R and OpenMPI in /home, in fact, it seems work OK. Editing the openmpi-def

Re: [R] R and Openmpi

2008-06-02 Thread Marce
2008/5/31 Dirk Eddelbuettel <[EMAIL PROTECTED]>: > > Paul, > > On 30 May 2008 at 15:47, Paul Hewson wrote: > | Hello, > | > | We have R working with Rmpi/openmpi, but I'm a little worried. > Specifically, (a) the -np flag doesn't seem to override the hostfile (it > works fine with fortran hello