Re: [R] null model for a single species?

2011-03-07 Thread Mike Marchywka
Date: Mon, 7 Mar 2011 14:15:49 +0100 From: johannes.pen...@mfn-berlin.de To: r-help@r-project.org Subject: [R] null model for a single species? Dear List members, I would like to test whether an observed occupancy of lakes in a landscape

Re: [R] Coefficient of Determination for nonlinear function

2011-03-06 Thread Mike Marchywka
From: uwe.wolf...@uni-ulm.de To: andy_l...@merck.com Date: Sat, 5 Mar 2011 17:14:12 +0100 CC: r-help@r-project.org; gunter.ber...@gene.com Subject: Re: [R] Coefficient of Determination for nonlinear function Dear Bert, dear Andy, thanks for

Re: [R] Rapache ( was Developing a web crawler )

2011-03-06 Thread Mike Marchywka
Date: Thu, 3 Mar 2011 13:04:11 -0600 From: matt.shotw...@vanderbilt.edu To: r-help@r-project.org Subject: Re: [R] Developing a web crawler / R webkit or something similar? [off topic] On 03/03/2011 08:07 AM, Mike Marchywka wrote

Re: [R] Monte carlo help

2011-03-06 Thread Mike Marchywka
Date: Sun, 6 Mar 2011 15:42:11 -0800 From: ksa...@gmail.com To: r-help@r-project.org Subject: [R] Monte carlo help Hello, I am currently doing my project and I need some help. I am trying to schedule tutors for a study room where students

Re: [R] How two compare two matrixes

2011-03-04 Thread Mike Marchywka
?image ?matrix z-matrix(rnorm(100),nrow=10) image(1:10,1:10,z) heatmap(z) Date: Fri, 4 Mar 2011 09:04:41 +0100 From: p.pa...@wzw.tum.de To: r-help@r-project.org Subject: Re: [R] How two compare two matrixes Dear all I have two 10*10

Re: [R] Developing a web crawler / R webkit or something similar?

2011-03-03 Thread Mike Marchywka
Date: Thu, 3 Mar 2011 01:22:44 -0800 From: antuj...@gmail.com To: r-help@r-project.org Subject: [R] Developing a web crawler Hi, I wish to develop a web crawler in R. I have been using the functionalities available under the RCurl package. I am able to extract the html content of

Re: [R] R and Android

2011-03-02 Thread Mike Marchywka
Date: Wed, 2 Mar 2011 11:44:41 + From: ali.zolfagh...@gmail.com To: r-help@r-project.org Subject: [R] R and Android Hi List, Is anybody aware of any R console available for Android mobile? I know that there is one for Iphone. I was just

Re: [R] Is there any Command showing correlation of all variables in a dataset?

2011-03-01 Thread Mike Marchywka
Date: Tue, 1 Mar 2011 02:41:00 -0800 From: joo...@hanmail.net To: r-help@r-project.org Subject: [R] Is there any Command showing correlation of all variables in a dataset? Thanks in advance. I want to derive correlations of variables

Re: [R] Simulation

2011-03-01 Thread Mike Marchywka
Date: Mon, 28 Feb 2011 19:18:18 -0800 From: kadodamb...@hotmail.com To: r-help@r-project.org Subject: [R] Simulation I tried looking for help but I couldn't locate the exact solution. I have data that has several variables. I want to do several

Re: [R] Hello!

2011-02-28 Thread Mike Marchywka
Date: Sun, 27 Feb 2011 14:31:57 -0800 [[elided Hotmail spam]] From: jwiley.ps...@gmail.com To: marchy...@hotmail.com CC: r-help@r-project.org On Sun, Feb 27, 2011 at 9:16 AM, Mike Marchywka wrote: I can probably find more negative ones

Re: [R] re-arranging data to create an image (or heatmap)

2011-02-28 Thread Mike Marchywka
ok, third try. This is a repost of a message never made it past mod as I cancelled while it was waiting to clean up some code to at least make it close to working. I think this does more or less what you want, library(VecStatGraphs2D) DrawDensityMap(x1,x2,PaintPoint=TRUE) but if not see

Re: [R] Hello!

2011-02-27 Thread Mike Marchywka
Date: Sun, 27 Feb 2011 08:27:00 -0800 From: markkne...@gmail.com To: gunter.ber...@gene.com CC: r-help@r-project.org Subject: Re: [R] Hello! On Sat, Feb 26, 2011 at 10:11 PM, Bert Gunter wrote: Are you a fan of James Joyce? Is the Caps key on your keyboard broken? -- Bert

Re: [R] Group rows by common ID and plot?

2011-02-25 Thread Mike Marchywka
Date: Thu, 24 Feb 2011 13:28:18 -0800 From: dannyb...@gmail.com To: r-help@r-project.org Subject: Re: [R] Group rows by common ID and plot? does this do what you want?  library(lattice)

Re: [R] problem installing R in Ubuntu 10.04 -HELP

2011-02-22 Thread Mike Marchywka
Date: Tue, 22 Feb 2011 11:12:26 +0100 From: r.m.k...@gmail.com To: graham.willi...@togaware.com CC: r-help@r-project.org Subject: Re: [R] problem installing R in Ubuntu 10.04 -HELP -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 02/22/2011

Re: [R] problem installing R in Ubuntu 10.04 -HELP

2011-02-22 Thread Mike Marchywka
- Hash: SHA1 On 02/22/2011 02:33 PM, Mike Marchywka wrote: Date: Tue, 22 Feb 2011 11:12:26 +0100 From: r.m.k...@gmail.com To: graham.willi...@togaware.com CC: r-help@r-project.org Subject: Re: [R] problem installing R in Ubuntu 10.04

Re: [R] Generating uniformly distributed correlated data.

2011-02-21 Thread Mike Marchywka
Date: Mon, 21 Feb 2011 13:03:53 +0100 From: erich.neuwi...@univie.ac.at To: soren.fau...@biology.au.dk; r-help@r-project.org Subject: Re: [R] Generating uniformly distributed correlated data. hw-function(r){ (3-sqrt(1+8*r))/4 }

Re: [R] Regarding Soft Independent Modeling Computational Analysis

2011-02-21 Thread Mike Marchywka
Date: Mon, 21 Feb 2011 10:45:17 +0530 From: reynoldspravin...@gmail.com To: r-help@r-project.org Subject: [R] Regarding Soft Independent Modeling Computational Analysis Hi I'm a B.E student pursuing my Project in the CEERI unit of the Council of

Re: [R] Generating uniformly distributed correlated data.

2011-02-21 Thread Mike Marchywka
Date: Mon, 21 Feb 2011 15:53:26 +0100 From: erich.neuwi...@univie.ac.at To: marchy...@hotmail.com CC: soren.fau...@biology.au.dk; r-help@r-project.org Subject: Re: [R] Generating uniformly distributed correlated data. We want to generate a

Re: [R] Seeking help in Package development

2011-02-20 Thread Mike Marchywka
Date: Sun, 20 Feb 2011 15:56:41 +0100 From: lig...@statistik.tu-dortmund.de To: jwiley.ps...@gmail.com CC: r-help@r-project.org Subject: Re: [R] Seeking help in Package development May I add that the best documentation for building

Re: [R] lm without intercept

2011-02-18 Thread Mike Marchywka
Date: Fri, 18 Feb 2011 12:25:36 +0100 From: achim.zeil...@uibk.ac.at To: jrheinlaen...@gmx.de CC: r-help@r-project.org Subject: Re: [R] lm without intercept On Fri, 18 Feb 2011, Jan wrote: Hi, I am not a statistics expert, so I have this

Re: [R] Boundaries of R

2011-02-18 Thread Mike Marchywka
Date: Fri, 18 Feb 2011 08:39:05 -0500 From: murdoch.dun...@gmail.com To: mich...@aers.ca CC: r-help@r-project.org Subject: Re: [R] Boundaries of R On 18/02/2011 5:44 AM, Michael Holt wrote: Hello Everyone, I'm pretty new to R and

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-15 Thread Mike Marchywka
...   ..$ : NULL lx    [,1]    [,2] 1  4.977983 -0.05752524 2  5.695654  0.21934024 3 -3.227248  2.03991177 4 -2.354248  0.01878125 5 -2.762453 -1.13571894 6 -2.329688 -1.08478908 Luca On Mon, Feb 14, 2011 at 6:40 PM, Mike Marchywka wrote

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-15 Thread Mike Marchywka
analyze my data with a MDS analysis? Luca On Mon, Feb 14, 2011 at 6:40 PM, Mike Marchywka wrote: Date: Mon, 14 Feb 2011 17:55:50 +0100 Subject: Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling From

Re: [R] Error : singular gradient matrix at initial parameters estimates

2011-02-15 Thread Mike Marchywka
Date: Tue, 15 Feb 2011 09:43:25 +0100 From: mariedidi...@gmail.com To: r-help@r-project.org Subject: [R] Error : singular gradient matrix at initial parameters estimates Dear all, I am a fresh user of R and I already face to problems that

Re: [R] string parsing

2011-02-15 Thread Mike Marchywka
To: r-h...@stat.math.ethz.ch From: s...@gnu.org Date: Tue, 15 Feb 2011 17:20:11 -0500 Subject: [R] string parsing I am trying to get stock metadata from Yahoo finance (or maybe there is a better source?) search this for yahoo,

Re: [R] rjava does not install

2011-02-14 Thread Mike Marchywka
[ stupid hotmail still not mark original, top post. I can't figure out when it is kind enough to do this and not, probably thinks I need to use html LOL ] The point seems to be that you need jni.h which apparently is only in the jdk, not the jre. If you install java it isn't clear what this

Re: [R] how to improve the precison of this calculation?

2011-02-14 Thread Mike Marchywka
[ anyone know how to get hotmail to consistently mark original text? Now its hanging my keyboard in firefox  LOL ] Anyway, I think I was the one advocating these approaches over things like indefinite length calculations and I punted the R questions to others but I'm not real sure what you

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-14 Thread Mike Marchywka
My first goal in the analysis process is to print a perceptual map where to place the pairs of audio-visual stimuli (e.g. WD-WD, MT-DL, etc.) and see how far the trials are from each other. I've been using heatmap for stuff like this. You can get a nice picture this way and get quick

Re: [R] how to order POSIXt objects ?

2011-02-14 Thread Mike Marchywka
Date: Mon, 14 Feb 2011 00:55:12 -0800 From: jon_d_co...@yahoo.co.uk To: r-help@r-project.org Subject: [R] how to order POSIXt objects ? I have a problem ordering by descending magnitude a POSIXt object. Can someone help please and let me know

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-14 Thread Mike Marchywka
the significant differences between the trials? If I used the ANOVA would be simple to get those p-values. I wonder if it is the case to use it... Help! Luca On Mon, Feb 14, 2011 at 3:23 PM, Mike Marchywka wrote: My first goal in the analysis process is to print a perceptual

Re: [R] Test for equivalence

2011-02-13 Thread Mike Marchywka
From: greg.s...@imail.org To: ment...@gmx.net; r-help@r-project.org Date: Sat, 12 Feb 2011 18:04:34 -0700 Subject: Re: [R] Test for equivalence Does it make sense for you to combine the 2 data sets and do a 2-way anova with treatment vs. control as one factor and experiment number as the

Re: [R] When is *interactive* data visualization useful to use?

2011-02-11 Thread Mike Marchywka
From: tal.gal...@gmail.com Date: Fri, 11 Feb 2011 08:26:16 +0200 To: r-help@r-project.org Subject: [R] When is *interactive* data visualization useful to use? Hello all, Before getting to my question, I would like to apologize for asking this

Re: [R] Installing R on cygwin

2011-02-10 Thread Mike Marchywka
I'm not sure I did anything special to install R for use with cygwin. Availability of RCurl appears to relate to windohs AFAICT from the CRAN page. I have never bothered to use this since I already use the related linux tools available through cygwin. Building from source may have become an

Re: [R] comparing proportions

2011-02-10 Thread Mike Marchywka
I had a longer draft before but I'll just ask if you ever looked at your data? cr=rainbow(3); plot(df$success+df$failure,df$prop.success,col=cr[as.numeric(df$group)],cex=as.numeric(df$group)) you'd have to suspect that p is a function of the number of trials per subject and that differences

Re: [R] Extracting content from web

2011-02-09 Thread Mike Marchywka
[ hotmail not marking orig text, top post for clarity] This is one of my current jihads, along with removing adjectives where numbers are available, and I'm curious if there is a FAQ on this somewhere? Scraping data from web pages is always a hack, any approach should include an attempt to fix

Re: [R] precision of gamma function

2011-02-09 Thread Mike Marchywka
Date: Wed, 9 Feb 2011 18:23:21 +0100 From: savi...@praha1.ff.cuni.cz To: r-help@r-project.org Subject: Re: [R] precision of gamma function On Wed, Feb 09, 2011 at 05:23:27PM +0200, Chuse chuse wrote: Dear R users, I have to calculate gamma

Re: [R] heatmap-how to change the order of the rows (genes)

2011-02-09 Thread Mike Marchywka
Date: Wed, 9 Feb 2011 12:18:57 -0500 From: yanliu...@gmail.com To: r-help@r-project.org Subject: [R] heatmap-how to change the order of the rows (genes) Hi, I have a question about the heatmap dendrogram in R. I loaded my data matrix in command

Re: [R] Recuperate Spectrum() amplitude

2011-02-08 Thread Mike Marchywka
Date: Tue, 8 Feb 2011 17:34:15 + From: marie.guil...@bordeaux.inra.fr To: r-help@r-project.org Subject: [R] Recuperate Spectrum() amplitude Dear list, I put the code I use here to understand if the difference comes from the way

Re: [R] waveThresh plot axis

2011-02-07 Thread Mike Marchywka
Date: Mon, 7 Feb 2011 10:49:54 +0100 From: eva.a...@gmail.com To: r-help@r-project.org Subject: [R] waveThresh plot axis Dear, I am using WaveTresh for Haar Wavelets. It works all fine exept when I want to adjust the axis on the wavelet

Re: [R] aggregate function - na.action/ performance issues re structs and algorithms

2011-02-07 Thread Mike Marchywka
From: had...@rice.edu Date: Mon, 7 Feb 2011 11:00:59 -0600 To: mdo...@mdowle.plus.com CC: r-h...@stat.math.ethz.ch Subject: Re: [R] aggregate function - na.action Does FAQ 1.8 answer that ok ? Ok, I'm starting to see what data.table is

Re: [R] Quadratic regression: estimating the maximizing value

2011-02-05 Thread Mike Marchywka
From: greg.s...@imail.org To: ghe...@blm.gov; r-help@r-project.org Date: Fri, 4 Feb 2011 17:49:51 -0700 Subject: Re: [R] Quadratic regression: estimating the maximizing value No, your approach is not correct. For one you have not taken the

Re: [R] spline interpolation

2011-02-05 Thread Mike Marchywka
From: dwinsem...@comcast.net To: asanram...@yahoo.com Date: Sat, 5 Feb 2011 10:24:04 -0500 CC: r-help@r-project.org Subject: Re: [R] spline interpolation On Feb 5, 2011, at 9:29 AM, Asan Ramzan wrote: Hello R-help I have the following data for a standard curve

Re: [R] spline interpolation

2011-02-05 Thread Mike Marchywka
Date: Sat, 5 Feb 2011 18:08:43 +0100 From: cbelei...@units.it To: r-help@r-project.org Subject: Re: [R] spline interpolation Hi, Just pure curiosity: may I ask why you want to do spline interplation on fluorescence intensity as function

[R] general question on approaches to getting data from data providers

2011-02-01 Thread Mike Marchywka
My question, buried in this rant, is is there a mail list or other means for identifying sites with information likely to be important to many R users but the data is difficult to obtain due to the site's choice of technology? Quite often, people here ask questions about scraping html to get

Re: [R] Positive Definite Matrix

2011-02-01 Thread Mike Marchywka
Date: Tue, 1 Feb 2011 15:41:01 + From: alex.sm...@gmail.com To: spencer.gra...@structuremonitoring.com CC: r-help@r-project.org; maech...@stat.math.ethz.ch Subject: Re: [R] Positive Definite Matrix Hello thank you for so much input. I am afraid that I am fairly new to this and some of

Re: [R] p value for joint probability

2011-02-01 Thread Mike Marchywka
Date: Tue, 1 Feb 2011 12:10:31 -0800 From: nord...@dshs.wa.gov To: r-help@r-project.org Subject: Re: [R] p value for joint probability -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- project.org] On Behalf Of moleps Sent: Tuesday,

Re: [R] Downloading data from internet

2011-01-25 Thread Mike Marchywka
From: ggrothendi...@gmail.com Date: Mon, 24 Jan 2011 22:43:55 -0500 To: megh700...@gmail.com CC: r-help@r-project.org Subject: Re: [R] Downloading data from internet On Mon, Jan 24, 2011 at 8:48 PM, Megh Dal wrote: Dear all, I need to download an excel file from net, on which I

Re: [R] which operating system + computer specifications lead to the best performance for R?

2011-01-23 Thread Mike Marchywka
Date: Sat, 22 Jan 2011 19:49:43 -0800 From: santosh.srini...@gmail.com To: r-help@r-project.org Subject: Re: [R] which operating system + computer specifications lead to the best performance for R? Hi Josh, I was referring to the below point that I read a while back when I installed my

Re: [R] question about result of loglinear analysis

2011-01-19 Thread Mike Marchywka
Date: Wed, 19 Jan 2011 01:20:06 -0800 From: djmu...@gmail.com To: laomen...@gmail.com CC: r-help@r-project.org Subject: Re: [R] question about result of loglinear analysis Hi: Well, you fit a saturated model. How many degrees of freedom do you have left for error? The fact that the

Re: [R] Counting dates in arbitrary ranges

2011-01-18 Thread Mike Marchywka
From: simonjk...@yahoo.ca Date: Tue, 18 Jan 2011 02:16:37 -0500 To: r-help@r-project.org Subject: [R] Counting dates in arbitrary ranges Dear Colleagues, I have a data set that looks as below. I'd like to count the number of dates in a series

Re: [R] Statistical formulas

2011-01-18 Thread Mike Marchywka
for any mistakes in my English, it is not my mother-tongue. note new address Mike Marchywka 487 Salem Woods Drive Marietta GA 30067 415-264-8477 (w)- use this 404-788-1216 (C)- leave message 989-348-4796 (P)- emergency only marchy...@hotmail.com Note: If I am asking for free stuff, I normally

Re: [R] Extraction and replacement of data in a data frame

2011-01-17 Thread Mike Marchywka
Date: Mon, 17 Jan 2011 12:51:43 -0800 From: michael.hopg...@mrm.se To: r-help@r-project.org Subject: [R] Extraction and replacement of data in a data frame Dear R family, I am a relative newbie and have been dabbling with R for a little

[R] getting R-readable data , not pictures, from US OTS data pages

2011-01-15 Thread Mike Marchywka
pictures are nice but I would imagine R users would benefit if computer readable data was readily available too. Many gov sites have real data and maybe I just need more coffee. Thanks. note new address Mike Marchywka 487 Salem Woods Drive Marietta GA 30067 415-264-8477 (w)- use this 404-788

Re: [R] How to *completely* stop a script after stop()?

2011-01-15 Thread Mike Marchywka
Date: Sat, 15 Jan 2011 11:29:20 -0500 From: c...@witthoft.com To: r-help@r-project.org Subject: [R] How to *completely* stop a script after stop()? Somehow this reminds me of a famous FORTRAN code snippet: 10 STOP STOP STOP ! IN CASE

Re: [R] how to calculate this natural logarithm

2011-01-11 Thread Mike Marchywka
Date: Sun, 9 Jan 2011 12:57:49 + From: c...@witthoft.com To: r-help@r-project.org Subject: Re: [R] how to calculate this natural logarithm You could re-do part of your code to run with mpfr-class variables, and use this function: # mpfr choose(n,k) rmpfac-function(n,k,prec=50)

Re: [R] Assumptions for ANOVA: the right way to check the normality

2011-01-10 Thread Mike Marchywka
I can't get hotmail to indicate the original text so I'm going to top post. There seems to be a lot of back and forth here, let me see if these comment help guide discussion a bit. I tried to run some histograms of your experiment (prior to a bunch of other things ) and IIRC in many cases you

Re: [R] Assumptions for ANOVA: the right way to check the normality

2011-01-10 Thread Mike Marchywka
( again top posting since hotmail isn't adding and these comments apply to whole thread anyway ) I'm not a statistician either but rather an engineer who has had a chance to use my intro stats/math background to look at some real life situations. I'm just making comments for conversation,

Re: [R] Accessing data via url

2011-01-07 Thread Mike Marchywka
Date: Fri, 7 Jan 2011 00:24:19 -0800 From: dieter.me...@menne-biomed.de To: r-help@r-project.org Subject: Re: [R] Accessing data via url John Kane-2 wrote: # Can anyone suggest why this works datafilename - http://personality-project.org/r/datasets/maps.mixx.epi.bfi.data;

Re: [R] Waaaayy off topic...Statistical methods, pub bias, scientific validity

2011-01-07 Thread Mike Marchywka
Date: Thu, 6 Jan 2011 23:06:44 -0800 From: peter.langfel...@gmail.com To: r-help@r-project.org Subject: Re: [R] Wyy off topic...Statistical methods, pub bias, scientific validity From a purely statistical and maybe somewhat naive point of view, published p-values should be

Re: [R] Simulation - Natrual Selection

2011-01-05 Thread Mike Marchywka
Date: Wed, 5 Jan 2011 15:48:46 + From: benjamin.w...@bathspa.org To: r-help@r-project.org Subject: [R] Simulation - Natrual Selection Hi, I've been modelling some data over the past few days, of my work, repeatedly challenging microbes to a certain concentration of cleaner,

Re: [R] Navigating web pages using R

2011-01-04 Thread Mike Marchywka
Date: Tue, 4 Jan 2011 10:54:19 -0800 From: egregory2...@yahoo.com To: r-help@r-project.org Subject: [R] Navigating web pages using R R-Help, I'm trying to obtain some data from a webpage which masks the URL from the user, so an explicit URL will not work. For example, when one

Re: [R] using plot with time series object - /hijack thread for quetion re R data capture

2011-01-03 Thread Mike Marchywka
Date: Mon, 3 Jan 2011 00:03:15 -0600 From: gnolff...@gmail.com To: r-help@r-project.org Subject: [R] using plot with time series object - axes = FALSE option does not appear to work Dear R-help, I am attempting to plot data using standard R plot utilities. The data was retrieved

Re: [R] Modules for using geostatistics for image classification

2011-01-02 Thread Mike Marchywka
From: chethanuniver...@gmail.com Date: Mon, 3 Jan 2011 06:42:21 +0530 To: r-sig-...@r-project.org; r-help@r-project.org Subject: [R] Modules for using geostatistics for image classification Hello everyone! I am using GRASS with spgrass6 for my work. I will be using variograms in the

Re: [R] modifying user agent strings in http requests

2010-12-27 Thread Mike Marchywka
From: soumen...@gmail.com Date: Mon, 27 Dec 2010 11:17:49 +0530 To: r-h...@stat.math.ethz.ch Subject: [R] modifying user agent strings in http requests Hi all. How does one change user agent strings in http requests made in R? And how do I figure out what my current user agent string

Re: [R] Parsing a Simple Chemical Formula

2010-12-27 Thread Mike Marchywka
Date: Sun, 26 Dec 2010 20:24:23 -0800 From: spencer.gra...@structuremonitoring.com To: han...@depauw.edu CC: r-h...@stat.math.ethz.ch Subject: Re: [R] Parsing a Simple Chemical Formula Mike Marchywka's post mentioned a CRAN package, rpubchem,

Re: [R] Parsing a Simple Chemical Formula

2010-12-27 Thread Mike Marchywka
From: han...@depauw.edu To: dwinsem...@comcast.net Date: Sun, 26 Dec 2010 22:36:49 -0500 CC: r-h...@stat.math.ethz.ch Subject: Re: [R] Parsing a Simple Chemical Formula Hi David others... I did find the function you recommended, plus, it's even easier (but a little hidden in the

Re: [R] Performing basic Multiple Sequence Alignment in R?

2010-12-26 Thread Mike Marchywka
From: marchy...@hotmail.com To: tal.gal...@gmail.com; r-help@r-project.org Subject: RE: [R] Performing basic Multiple Sequence Alignment in R? Date: Tue, 21 Dec 2010 17:03:17 -0500 From: tal.gal...@gmail.com Date: Tue, 21 Dec 2010 20:17:18 +0200 Subject: Re: [R] Performing basic

Re: [R] Parsing a Simple Chemical Formula

2010-12-26 Thread Mike Marchywka
I think the OP had a very limited need but there is something more sophisticated that may be of larger insterest called SMILES which attempts to capture some structural information about a molecule in a text sting. Reducing pictures to tractable text is an important step in many analysis efforts

Re: [R] Performing basic Multiple Sequence Alignment in R?

2010-12-21 Thread Mike Marchywka
I don't have an answer, trying to solicit more input with additional questions. From: tal.gal...@gmail.com Date: Tue, 21 Dec 2010 11:21:03 +0200 To: r-help@r-project.org; bioconduc...@r-project.org Subject: [R] Performing basic Multiple Sequence Alignment in R? Hello everyone, I am

Re: [R] Performing basic Multiple Sequence Alignment in R?

2010-12-21 Thread Mike Marchywka
me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics.com (English) -- On Tue, Dec 21, 2010 at 2:44 PM, Mike Marchywka wrote: e came here with a task

Re: [R] Resource for learning C/R interface

2010-12-19 Thread Mike Marchywka
Date: Sun, 19 Dec 2010 01:34:28 -0500 From: mailinglist.honey...@gmail.com To: cjul...@bu.edu CC: r-help@r-project.org Subject: Re: [R] Resource for learning C/R interface Hi, On Sat, Dec 18, 2010 at 11:29 PM, Julian TszKin Chan wrote: Hi

Re: [R] Solution to differential equation

2010-12-17 Thread Mike Marchywka
sorry, wanted to CC list hit wrong button no caffeine From: rvarad...@jhmi.edu To: rvarad...@jhmi.edu Date: Thu, 16 Dec 2010 22:37:17 -0500 CC: r-help@r-project.org; msamt...@gmail.com Subject: Re: [R] Solution to differential equation One small correction to my previous email:

Re: [R] Solution to differential equation

2010-12-15 Thread Mike Marchywka
Date: Wed, 15 Dec 2010 11:46:40 -0500 From: msamt...@gmail.com To: r-help@r-project.org Subject: [R] Solution to differential equation Hello, I am trying to find the analytical solution to this differential equation dR/dt =

Re: [R] multivariate multi regression / aligning objects anything in bio or mapping?

2010-12-14 Thread Mike Marchywka
From: pda...@gmail.com Date: Tue, 14 Dec 2010 13:50:27 +0100 To: bastiaan.berg...@wdc.com CC: r-help@r-project.org Subject: Re: [R] multivariate multi regression On Dec 14, 2010, at 03:21 , Bastiaan Bergman wrote: That doesn't work, one

Re: [R] Installing R-packages in Windows

2010-12-14 Thread Mike Marchywka
( hotmail just randomly decides not to prefix original text, my comments below) Date: Tue, 14 Dec 2010 17:36:11 +0100 From: er...@phonetik.uni-muenchen.de To: r-help@r-project.org Hi there, I have the following problem and I hope somebody

Re: [R] Installing R-packages in Windows

2010-12-14 Thread Mike Marchywka
, Mike Marchywka wrote: ( hotmail just randomly decides not to prefix original text, my comments below) Date: Tue, 14 Dec 2010 17:36:11 +0100 From: er...@phonetik.uni-muenchen.de To: r-help@r-project.org Hi there, I have

Re: [R] help requested

2010-12-10 Thread Mike Marchywka
From: jinyan...@gmail.com Date: Fri, 10 Dec 2010 17:20:00 +0100 To: prof...@live.com CC: r-help@r-project.org Subject: Re: [R] help requested awk '{arr[$1]=arr[$1] $2}END{for( i in arr){print i,arr[i]}}' edgelist.txt | sort -k1 My first

Re: [R] Parallel Scan of Large File

2010-12-08 Thread Mike Marchywka
Date: Tue, 7 Dec 2010 17:22:57 -0800 From: ryan.steven.gar...@gmail.com To: r-help@r-project.org Subject: [R] Parallel Scan of Large File Is it possible to parallel scan a large file into a character vector in 1M chunks using scan() with the

Re: [R] GIS Help: distance calculation based on ZIP Code

2010-12-08 Thread Mike Marchywka
From: ggrothendi...@gmail.com Date: Wed, 8 Dec 2010 10:50:40 -0500 To: lihaw...@gmail.com CC: r-help@r-project.org Subject: Re: [R] GIS Help: distance calculation based on ZIP Code On Wed, Dec 8, 2010 at 10:41 AM, XINLI LI wrote: Dear

Re: [R] GIS Help: distance calculation based on ZIP Code

2010-12-08 Thread Mike Marchywka
Date: Wed, 8 Dec 2010 19:25:09 + Subject: Re: [R] GIS Help: distance calculation based on ZIP Code From: b.rowling...@lancaster.ac.uk To: lihaw...@gmail.com CC: marchy...@hotmail.com; r-help@r-project.org On Wed, Dec 8, 2010 at 6:18 PM,

Re: [R] Time out for a R Function

2010-12-07 Thread Mike Marchywka
Date: Tue, 7 Dec 2010 16:11:42 +1100 From: michael.bedw...@gmail.com To: santosh.srini...@gmail.com; r-help@r-project.org Subject: Re: [R] Time out for a R Function Below is a toy function with one way of doing it. There are bound to be better

Re: [R] R problem

2010-12-07 Thread Mike Marchywka
From: bruce...@usc.edu To: r-help@r-project.org Date: Tue, 7 Dec 2010 09:27:21 -0800 Subject: [R] R problem I'm using R version 2.12.0 I'm trying to open a stata file (.dta); but I keep getting the message: Error in

Re: [R] Downloading quote data from yahoo finance

2010-12-04 Thread Mike Marchywka
From: josh.m.ulr...@gmail.com Date: Sat, 4 Dec 2010 14:47:45 -0600 To: debmi...@yahoo.com CC: r-help@r-project.org Subject: Re: [R] Downloading quote data from yahoo finance On Wed, Dec 1, 2010 at 11:15 PM, Deb Midya wrote: Hi R users,

Re: [R] Strange problems with compiling dll

2010-12-03 Thread Mike Marchywka
Date: Fri, 3 Dec 2010 08:07:15 +0100 From: rom...@r-enthusiasts.com To: r-help@r-project.org CC: diklev...@gmail.com Subject: Re: [R] Strange problems with compiling dll Hello, Your question is more appropriate on the R-devel mailing list.

Re: [R] using foreach (parallel processing)

2010-12-02 Thread Mike Marchywka
Date: Thu, 2 Dec 2010 11:06:14 +0100 From: r.m.k...@gmail.com To: santosh.srini...@gmail.com CC: r-help@r-project.org Subject: Re: [R] using foreach (parallel processing) -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 12/02/2010 10:56 AM,

Re: [R] Moran I for very large data set

2010-11-30 Thread Mike Marchywka
Date: Tue, 30 Nov 2010 04:51:10 -0800 From: roger.biv...@nhh.no To: r-help@r-project.org Subject: Re: [R] Moran I for very large data set First, 14000 is not a large data set, unless you are trying to create a dense matrix, which will

Re: [R] Evaluation of survival analysis

2010-11-30 Thread Mike Marchywka
:26 AM Subject: Re: [R] Evaluation of survival analysis To: Mike Marchywka Cc: r-help@r-project.org On Tue, Nov 30, 2010 at 1:18 AM, Mike Marchywka wrote: Hello Mike, Thank you very much for your reply and help. May i describe the analysis more clearly? My data is ecology data and my

Re: [R] excluding factors from sampling

2010-11-30 Thread Mike Marchywka
I think before for a sensitivty analysis I suggested just using runiform and an aribtrary cutoff. You could keep logically or-ing your prior hits Run runiform of the needed length, do vector boolean ops from exclusion criteria to get ones you want, get a logical vector or true/false, select

Re: [R] Outlier statistics question

2010-11-30 Thread Mike Marchywka
- - - - - - From: rvarad...@jhmi.edu To: gunter.ber...@gene.com Date: Tue, 30 Nov 2010 22:53:43 -0500 CC: r-help@r-project.org; jahan.mohiud...@gmail.com Subject: Re: [R] Outlier statistics question It is, perhaps, more apt to call the tests of outliers as tests of outright

Re: [R] Evaluation of survival analysis

2010-11-29 Thread Mike Marchywka
Date: Mon, 29 Nov 2010 09:26:07 +0100 From: hzsha...@googlemail.com To: r-help@r-project.org Subject: [R] Evaluation of survival analysis Dear all, May I ask is there any functions in R to evaluate the fitness of coxph and survreg in

Re: [R] periodic time series

2010-11-29 Thread Mike Marchywka
Date: Sun, 28 Nov 2010 14:48:54 -0800 From: fek...@yahoo.co.uk To: r-help@r-project.org Subject: [R] periodic time series Hi all, A beginner's question: I have to analyse univariate, strongly periodic data collected every hour for a period

Re: [R] Installing RQuantLib on Win 7 64 Bit

2010-11-27 Thread Mike Marchywka
Date: Thu, 25 Nov 2010 21:22:54 -0600 To: santosh.srini...@gmail.com From: e...@debian.org CC: r-help@r-project.org Subject: Re: [R] Installing RQuantLib on Win 7 64 Bit On 26 November 2010 at 07:05, Santosh Srinivas wrote: | Hello

Re: [R] help: program efficiency

2010-11-27 Thread Mike Marchywka
So in this example, it seems more efficient to sort first and use the algorithm assuming that the data is sorted. There is probably a way to be smarter in nodup_cpp where the bottleneck is likely to be related to map::find. If you just use a hash table, std::map should work too, I don't

Re: [R] Installing RQuantLib on Win 7 64 Bit

2010-11-26 Thread Mike Marchywka
Date: Thu, 25 Nov 2010 21:22:54 -0600 To: santosh.srini...@gmail.com From: e...@debian.org CC: r-help@r-project.org Subject: Re: [R] Installing RQuantLib on Win 7 64 Bit On 26 November 2010 at 07:05, Santosh Srinivas wrote: | Hello Group, |

Re: [R] help: program efficiency

2010-11-26 Thread Mike Marchywka
Date: Fri, 26 Nov 2010 11:25:26 -0800 From: roman.lust...@gmail.com To: r-help@r-project.org Subject: Re: [R] help: program efficiency Oops, tiny mistake. Try lapply(X = b, FUN = function(x) { swn - seq(from = 0, to = (0 +

Re: [R] Lifting Wavelet Transform

2010-11-25 Thread Mike Marchywka
( I'm top posting for clarity, hotmail decided not to original text and I'm not going to even try to outguess it LOL) I have a non-definitive negative answer : I found two packages but it isn't obvious either expose anything related to lifting. I haven't worked with these lately and so not

Re: [R] help: program efficiency

2010-11-25 Thread Mike Marchywka
Date: Thu, 25 Nov 2010 06:49:19 -0800 From: rando...@gmail.com To: r-help@r-project.org Subject: [R] help: program efficiency hey guys, I am working on a function to make a duplicated value unique. For example, the original vector would be

Re: [R] Performance tuning tips when working with wide datasets

2010-11-24 Thread Mike Marchywka
Date: Wed, 24 Nov 2010 13:23:32 +0100 From: cbelei...@units.it To: r-help@r-project.org Subject: Re: [R] Performance tuning tips when working with wide datasets Dear Richard, Does anyone have any performance tuning tips when working with

Re: [R] Population abundance, change point

2010-11-24 Thread Mike Marchywka
:15:55 AM: [image removed] Re: [R] Population abundance, change point Gavin Simpson to: Jonathan P Daily 11/24/2010 09:16 AM Cc: Mike Marchywka, r-help, r-help-bounces, carusonm Please respond to gavin.simpson On Wed, 2010-11-17 at 09:17 -0500, Jonathan P Daily

Re: [R] How to call web service in R

2010-11-23 Thread Mike Marchywka
Date: Tue, 23 Nov 2010 11:28:15 + From: b.rowling...@lancaster.ac.uk To: xiagao1...@gmail.com CC: r-help@r-project.org Subject: Re: [R] How to call web service in R On Tue, Nov 23, 2010 at 8:09 AM, 夏高 wrote: Actually RCurl is not for

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